Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1527 356 2e-93 seq1207 109 5e-19 seq1889 104 2e-17 seq1196 104 2e-17 seq1346 86.0 5e-12 >seq1527 Length=671880 Score = 356 bits (394), Expect = 2e-93 Identities = 748/1091 (69%), Gaps = 37/1091 (3%) Strand=Plus/Minus Query 55722 GAAGTTGTAATCGCAGATACGGACGGTTCTCATCTTGCTCCGCTCTATTACGAATATCAG 55781 ||| ||||| | || ||||| |||||| ||||| | ||||| | | | | ||| | Sbjct 504714 GAAATTGTAGTAGCCGATACTGACGGTAGCCATCTCCCACCGCTAGACTTCTCA-ATCGG 504656 Query 55782 -GAATTAAATCAACCTTTCGAAACGCGAGTCGTG-GATAAAATCGTTGCCGCATATTTTG 55839 ||| |||| |||| ||| | || || ||| | |||| | || | ||||||||| | Sbjct 504655 AGAAAGAAATAAACCGTTCAA---GC-AGACGTCCGGTAAAGTGGTGGGCGCATATTTCG 504600 Query 55840 TCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCACTCGAGTTCCCACTCCTAATCTGT 55899 ||||||||||||| |||| || || || || || || || || | || ||| || Sbjct 504599 TCGAGTGGGGTGTATATCCGAGGAAGTTCCCAGTTGACCGTGTGCCAATCCCGAATTTGA 504540 Query 55900 CACACATTCTCTACGGATTCATACCGATATGCGGCGGCGACGGCATTAACGACAGTCTCA 55959 | || | || ||||||||||| || || || || || || || || ||||||||| | | Sbjct 504539 CCCATTTGCTGTACGGATTCATCCCAATTTGTGGAGGTGATGGGATCAACGACAGTTTGA 504480 Query 55960 AGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATCGTGTTCGGGTCGAGACGACTTCA 56019 | || || ||||| |||| | || |||||||| || || || ||||||| Sbjct 504479 AAGAAATCGAAGGCAGTTTCCAAGCTTTGCAACGATCGTGCAGTGGCCGGGAAGACTTCA 504420 Query 56020 AAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAAGCCCCAAAAACAAGTGACCGCAT 56079 | || |||||||| ||||||||||| || |||| ||||| || || | || | ||| Sbjct 504419 AGGTTTCGATTCACGACCCGTGGGCCGCTCTCCAGAAGCCACAGAAGGGATTGTCTTCAT 504360 Query 56080 GGAACGAACCATACAAAGGCAACTTTGGACAATTGATGGCAGCTAAACTGGCGAATCCCC 56139 |||||||||| |||||||||||||||||||| |||||| |||| || || ||| Sbjct 504359 GGAACGAACCTTACAAAGGCAACTTTGGACAGTTGATGATGTTGAAACAAGCTAAACCCG 504300 Query 56140 ATGTTAAAGTGCTGCCTTCGATCGGTGGCTGGACTTTATCCGATCCGTTCTTTTACTTTC 56199 | | ||| | ||||||| |||||||| |||||||| | ||||| ||||| | | ||| Sbjct 504299 ACATGAAAATCTTGCCTTCCATCGGTGGGTGGACTTTGGCTGATCCCTTCTTCTTC-TTC 504241 Query 56200 AC-GATGCGGTCAAACGCAAAATTTTTGTCGATTCTGTCGTCGAGTTTTTACAGACCTGG 56258 || || | || | | ||||| | ||| || || || | |||||||| Sbjct 504240 ACTGACAAGTCTAAGAGAGACCGATTTGTAGCTTCAGTGAAGGACTTCCTCGAGACCTGG 504181 Query 56259 AAATTTTTCGATGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAGGGGGCCAATTCC 56318 || || ||||| ||||| ||||||||||||||||| || ||||| || || ||||| | Sbjct 504180 AAGTTCTTCGACGGTGTTGACATCGACTGGGAGTTCCCTGGCGGCAAAGGTGCCAACCCT 504121 Query 56319 AACGTCGGCGATGCCGAACGCGATCGCAACACGTACACGATTCTGTTACG--AGATTTAC 56376 ||| | ||| | || | ||| | | ||| ||| || ||| | ||| | | Sbjct 504120 AACCTTGGCAGTCCCAA---GGATGG--TGATGTATACGTGTCGCTTATGAAAGAACTTC 504066 Query 56377 GCGAAGCGCTAGACCGA---CTAAGCCTCGAAAC-GAATCGAACATACGAGCTAACCAGC 56432 | ||| | | || || | ||| ||||| | | ||| ||| ||||| || Sbjct 504065 GTGAAATG-TTGAATGAGCTGTCAGC--TGAAACTGGAAAGAA-ATATGAGCTGACTTCA 504010 Query 56433 GCCATTAGCGCCGGCGATGACAAAATCACGGTCGTCGACTACACAGCCGCTCAAAAATAT 56492 ||||| |||||||| ||||||||| || || |||||| || || || ||||| Sbjct 504009 GCCATCAGCGCCGGTTGGGACAAAATCCAAGTGGTGAACTACAAAGAAGCCCAGAAATAC 503950 Query 56493 TTAGATTATAtttttttGATGACATACGATTTTAAAGGCGCTTGGTCGAATAGCGATCTG 56552 | ||| | ||||| || |||| || || || ||||| || |||||||| | | || Sbjct 503949 ATGGATCACATTTTCTTCATGAGTTATGACTTCAAAGGAGCCTGGTCGAACGACACTTTG 503890 Query 56553 GGCTATCAGACGACTTTGTACGCGCCTGCGTTTAATCCTAAAGAACAC-TATACGACCGA 56611 ||| | ||||| | ||||||||||||||| || || |||| | || || ||||| || Sbjct 503889 GGCCACCAGACATCACTGTACGCGCCTGCGTGGAAACC-AAAGGAGACTTACACGACAGA 503831 Query 56612 TTTTGCGGTTCGTGCTCTGCTTAAACAAAAAGTCGAGAA---TAAAAAGATTGTAGTCGG 56668 ||| | ||| ||| | | | | || ||| || ||||| ||||||| Sbjct 503830 TTTCGGAGTTAAATACCTGTT---AGCTCAGGGCGTGAACCCGAAGAAGATAATAGTCGG 503774 Query 56669 CGTAGCTATGTACGGTCGCGGGTGGACCGGCGTCGGTGATTTCGTCGACAAAAACAATCC 56728 ||||||||||||||| || || ||||| || || | | | ||| |||||||| Sbjct 503773 CGTAGCTATGTACGGCCGTGGTTGGACAGGAGTTCAGAACTACACAGAC---AACAATCC 503717 Query 56729 ATTTTCCGGCACGGCCA-AGGGACCTGTCAAAGGTACCTGGGAAGACGGAGTCGTTGATT 56787 |||| | || | |||| ||| |||| ||||||| | ||| |||| || |||||||||| Sbjct 503716 ATTTACTGGTAATGCCACAGGTCCCTG-CAAAGGTTCTTGGCAAGATGGTGTCGTTGATT 503658 Query 56788 TTAGAGAAATT 56798 |||||| ||| Sbjct 503657 ATAGAGACATT 503647 >seq1207 Length=6027761 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || ||||| || |||||| | || ||| | ||||| ||| ||| | Sbjct 2998023 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAG-CCATC 2997965 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| ||||| | || || || ||| ||||| |||||||| || || || || Sbjct 2997964 AGACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCA 2997905 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||| | || |||||||| | ||||| | | | | ||| || || Sbjct 2997904 GCAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACGCTTTCCGACTACAA 2997845 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||| || ||||| | |||||||| ||| | |||||||| ||| Sbjct 2997844 CATTCAAAAGGAGTCTACTCTACATTTAGTATTACGTTTGAGAGGTGGA 2997796 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| || ||||| || || || | |||||| | ||||| ||| | Sbjct 2996688 AAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCCT 2996629 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || || || || | || ||| |||||| || ||||| || || ||||| ||| Sbjct 2996628 TCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGAT 2996569 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTA 24166 || ||| ||||||| | || |||||||| | ||||| | || | || | |||||| Sbjct 2996568 CAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACAC-TATCCGATTA 2996510 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||| ||||||||||| ||||||| || || Sbjct 2996509 CAATATTCAGAAAGAATCTACCCTTCATTTGGTATT 2996474 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| || ||||| || || || | |||||| | ||||| ||| | Sbjct 2998254 AAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCCT 2998195 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || || || || | || ||| |||||| || ||||| || || ||||| ||| Sbjct 2998194 TCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGAT 2998135 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTA 24166 || ||| ||||||| | || |||||||| | ||||| | || | || | |||||| Sbjct 2998134 CAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACAC-TATCCGATTA 2998076 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||| ||||||||||| ||||||| || || Sbjct 2998075 CAATATTCAGAAAGAATCTACCCTTCATTTGGTATT 2998040 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||||||| ||| | || || | ||||| ||| ||| | Sbjct 3525470 ATGCAGATATTTGTGAAAACTTTAACTGGTAAAACTATAACTTTAGAAGTTGAG-CCATC 3525412 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || ||| || ||| ||||| || || || ||||| || || Sbjct 3525411 TGACACAATTGAAAATGTTAAAGCCAAAATTCAGGACAAGGAGGGTATCCCTCCAGACCA 3525352 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | ||||| | || || || ||| | ||||| | | | | || ||||| || Sbjct 3525351 ACAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACCCTCTCTGATTACAA 3525292 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| ||||||||||| || Sbjct 3525291 CATACAAAAAGAATCCAC 3525274 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 ||||||||||| | || || || || || ||||| ||| | ||||| | ||||| || Sbjct 3528212 AACAAAATGCAGATTTTCGTTAAGACCTTGACTGGTAAAACCATTACATTGGAAGTTGAA 3528153 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 || || || ||||| | || ||| || || |||||||||||||| || || Sbjct 3528152 CCCTCTGATACAATCGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCGCCT 3528093 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 ||||| ||| | ||||| | || || || || | ||||| | | | | || ||| Sbjct 3528092 GATCAGCAGCGCCTGATCTTCGCTGGAAAACAGTTGGAAGACGGTCGCACCCTCTCCGAC 3528033 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || |||||||| ||||| || |||| || ||| Sbjct 3528032 TACAATATTCAAAAGGAATCAACCCTTCACTTGGTG 3527997 >seq1889 Length=140810 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| || ||||| || || || | |||||| | ||||| ||| | Sbjct 27460 AAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCCT 27519 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || || || || | || ||| |||||| || ||||| || || ||||| ||| Sbjct 27520 TCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGAT 27579 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTA 24166 || ||| ||||||| | || |||||||| | ||||| | || | || | |||||| Sbjct 27580 CAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACAC-TATCCGATTA 27638 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||| ||||||||||| ||||||| || || Sbjct 27639 CAATATTCAGAAAGAATCTACCCTTCATTTGGTATT 27674 >seq1196 Length=1288689 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | || ||||||||| | || || || | || ||| | || || || || Sbjct 730406 CACAATGCAGATCTTCGTAAAAACACTTACGGGGAAGACCATCACCCTTGAGGTGGAAGC 730347 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||||||||| | || ||| || ||| || || ||||| || ||||| || Sbjct 730346 TTCTGACACCATCGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCGGA 730287 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGAT 24164 || ||| |||| || | || ||||| ||||| ||||||| | | | ||||| | Sbjct 730286 CCAGCAGCGACTTATCTTCGCTGGCAAACAACTGGAAGATGGCCGCACATTGTCAG--AC 730229 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || |||||||| || || || | || || ||| |||||||||||||||| Sbjct 730228 TACAATATTCAAAAGGAGTCCACCTTGCACTTGGTGCTAAGATTGAGAGGAGG 730176 >seq1346 Length=947742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 111/153 (73%), Gaps = 8/153 (5%) Strand=Plus/Plus Query 104911 TCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCAAGCCAGGTA-GAGCCCCtttttttGT 104969 |||||||||||||| ||||| |||||| |||| | ||||| | ||||||| | || Sbjct 445070 TCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTT---- 445125 Query 104970 GTCTTTAATATAGTAGATGGCAGCAAAACTACCGGAGAAAAAGACACCTTCGACGATGGC 105029 || | || |||||| ||| ||||| || ||||| |||| |||||||| || Sbjct 445126 ---CTTCAGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGC 445182 Query 105030 AAACGCGACCATGCGTTCGGCGAATGTAGCAGT 105062 ||| || || || ||||| | ||||| ||||| Sbjct 445183 AAAAGCCACAATTCGTTCTCCAAATGTGGCAGT 445215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429897743891655