Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1527 313 2e-80 seq1168 136 3e-27 seq2599 96.9 3e-15 seq1207 96.9 3e-15 >seq1527 Length=671880 Score = 313 bits (346), Expect = 2e-80 Identities = 604/882 (68%), Gaps = 23/882 (3%) Strand=Plus/Minus Query 32177 GCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTGCCGTTG 32236 || ||||| || || ||||| || || | | || |||||| | ||| ||||| | Sbjct 504609 GCATATTTCGTCGAGTGGGGTGTATATCCGAGGAAGTTCCCAGTTGACCGTGTGCCAATC 504550 Query 32237 CCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGACTAAAC 32296 || |||||| | ||| || |||||||||| || || ||||| || || || || | ||| Sbjct 504549 CCGAATTTGACCCATTTGCTGTACGGATTCATCCCAATTTGTGGAGGTGATGGGATCAAC 504490 Query 32297 GATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCAAAGGCC 32354 || | ||| || | || |||||||| | || ||||||| ||||||| |||| Sbjct 504489 GACAGTTTGAAA--GAAATCGAAGGCAGTTTCCAAGCTTTGCAACGATCGTGCAGTGGCC 504432 Query 32355 GCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGCAGAAGG 32414 | | |||||| |||||| | ||||||||||| |||||||| | || || || ||||||| Sbjct 504431 GGGAAGACTTCAAGGTTTCGATTCACGACCCGTGGGCCGCTCTCCAGAAGCCACAGAAGG 504372 Query 32415 GCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGGCCAAGT 32474 | ||||| | ||||||||||| ||||||||||||||||| || |||||| | || Sbjct 504371 GATTGTCTTCATGGAACGAACCTTACAAAGGCAACTTTGGACAGTTGATGATGTTGAAAC 504312 Query 32475 TGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGGATCCCT 32534 || || || |||| ||||| || || || || || |||||||| ||| | ||||||| Sbjct 504311 AAGCTAAACCCGACATGAAAATCTTGCCTTCCATCGGTGGGTGGACTTTGGCTGATCCCT 504252 Query 32535 TTTATTTTATGCAC-GACGCGGAAAAACGGCACGTGTTTGTCGATTCCGTCAAAGAGTTT 32593 | | | || | ||| ||| | || | || ||||| | ||| || || || || Sbjct 504251 TCT-TCTTCTTCACTGACAAGTCTAAGAGAGACCGATTTGTAGCTTCAGTGAAGGACTTC 504193 Query 32594 TTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGGCGGCAAA 32653 | || ||||| ||||| ||||| || ||||| || ||||||||||| ||||||||| Sbjct 504192 CTCGAGACCTGGAAGTTCTTCGACGGTGTTGACATCGACTGGGAGTTCCCTGGCGGCAAA 504133 Query 32654 GGTGCCAACCCGGCGCT---CGGTAACGGGGAGCGCGACGCGCACACGTACATTATTTTG 32710 ||||||||||| || | || | ||| | || | || || ||| Sbjct 504132 GGTGCCAACCCTAACCTTGGCAGTCCCAAGGATGGTGATGTATACGTGTCGCTTA----- 504078 Query 32711 TTACAAGAATTGCGTTCTATGCTGGACGACCT-TCAATTGCAAACGGGCAAAACGTACGA 32769 | ||||| | ||| ||| || | || || ||| || |||| || || | || || Sbjct 504077 -TGAAAGAACTTCGTGAAATGTTGAATGAGCTGTCAGCTG-AAACTGGAAAGAAATATGA 504020 Query 32770 GTTGACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGAAGCCGC 32829 | ||||| || || || ||||| |||||||| |||||| | || ||| || Sbjct 504019 GCTGACTTCAGCCATCAGCGCCGGTTGGGACAAAATCCAAGTGGTGAACTACAAAGAAGC 503960 Query 32830 GCAAAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGGTCTAA 32889 || || ||| | ||| | || || |||||||||| ||||| ||||| || ||||| || Sbjct 503959 CCAGAAATACATGGATCACATTTTCTTCATGAGTTATGACTTCAAAGGAGCCTGGTCGAA 503900 Query 32890 CACCGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGAATTGTA 32949 | | ||||||| | ||||| | ||||||| || ||||| || | || || Sbjct 503899 CGACACTTTGGGCCACCAGACATCACTGTACGCGCCTGCGTGGAAACCAAAGGAGACTTA 503840 Query 32950 CACCACAGATCACGCTGTTAAAT---TGTTAACAAGTCAAGGTGTAGCTTCTTACAAAAT 33006 ||| |||||| || ||||||| ||||| | ||| || || | | || || Sbjct 503839 CACGACAGATTTCGGAGTTAAATACCTGTTAGC---TCAGGGCGTGAACCCGAAGAAGAT 503783 Query 33007 CATTGTCGGCATCGCCATGTACGGTCGCGGGTGGACGGGCGT 33048 || |||||| | || |||||||| || || ||||| || || Sbjct 503782 AATAGTCGGCGTAGCTATGTACGGCCGTGGTTGGACAGGAGT 503741 >seq1168 Length=7897672 Score = 136 bits (150), Expect = 3e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 109310 TAGCCGAGGCCGGGTTTTATTACACGGGCCAGGGCGATAAAACCAAATGTTTTTATTGTG 109369 |||| || ||||| ||||||||||| ||||| ||||| || || || |||| || |||| Sbjct 2386401 TAGCTGAAGCCGGTTTTTATTACACCGGCCAAGGCGACAAGACTAAGTGTTACTACTGTG 2386460 Query 109370 ACGGCGGTTTGAAAGACTGGGAGGCGGACGATGAGCCGTGGAAACTGCACGCGCGTTGGT 109429 |||| || ||||||| ||||| ||||||| |||||| | | |||||| ||||||| Sbjct 2386461 ACGGAGGCCTGAAAGATTGGGAAAAAGACGATGTACCGTGGGAGCAGCACGCTCGTTGGT 2386520 Query 109430 TTGACCGTTGCCCTTACGTGTTGCTTGTTAAGGGTCGAGATTATGTGCAAAAAATTGTAA 109489 |||||||||| ||| || | |||||||| || || |||||| | |||| || || Sbjct 2386521 TTGACCGTTGTTATTATGTATACCTTGTTAAAGGACGCGATTATATAAAAAAGGTTTTAG 2386580 Query 109490 CGGAATCG 109497 | || ||| Sbjct 2386581 CCGATTCG 2386588 >seq2599 Length=163288 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 112403 GTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCATGGTCTTGGTTCGT 112462 |||||| ||||| || | ||||| | | | || || ||||| || ||||| | ||| Sbjct 63344 GTTGCCAAGGTCTCCAATGTGTCTCACTGTAGCATCTGGTGCTCCGTGGTCATTCTTCAG 63403 Query 112463 GGGGTTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTCGCCAAACTCGTGCAC 112522 |||||| || || | |||||||| ||||| ||||| | |||| || ||||||||||| Sbjct 63404 GGGGTTGAAGTGAGCCCCCGCCGAGGTGCAGCCGTTTGTGTTGTCCCCGAACTCGTGCAC 63463 Query 112523 GTGAAAACCGTGC 112535 ||| ||||||||| Sbjct 63464 GTGGAAACCGTGC 63476 >seq1207 Length=6027761 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || | || ||||||||||| ||| | ||| ||| ||| | Sbjct 2998023 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAG-CCATC 2997965 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| | | | | || || |||||| || || |||||| | ||| || || Sbjct 2997964 AGACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCA 2997905 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | || ||||| || || ||||| | || | |||| || || Sbjct 2997904 GCAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACGCTTTCCGACTACAA 2997845 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||| ||||||||| ||||| | || || | ||| |||| |||| Sbjct 2997844 CATTCAAAAGGAGTCTACTCTACATTTAGTATTACGTTTGAGAGGTGGAA 2997795 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || |||||||| ||||| ||||||||||| || | ||| || ||| | Sbjct 3526154 ATGCAGATATTCGTCAAAACTCTCACTGGAAAAACCATCACACTAGAAGTAGA-ACCATC 3526096 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | | | || ||| |||||| || ||||| || | ||| || || Sbjct 3526095 TGACACAATAGAAAATGTCAAAGCTAAAATTCAGGACAAAGAGGGAATTCCCCCAGACCA 3526036 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | || | ||| ||||| ||||| ||||||| | ||| || | || ||||| Sbjct 3526035 GCAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGACTATAA 3525976 Query 115465 CATTCAAAAAGAGTCTACTATACAT 115489 ||| || || ||||||||| | ||| Sbjct 3525975 CATCCAGAAGGAGTCTACTCTCCAT 3525951 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || |||||||| ||||| ||||||||||| || | ||| || ||| | Sbjct 3527294 ATGCAGATATTCGTCAAAACTCTCACTGGAAAAACCATCACACTAGAAGTAGA-ACCATC 3527236 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | | | || ||| |||||| || ||||| || | ||| || || Sbjct 3527235 TGACACAATAGAAAATGTTAAAGCTAAAATTCAGGACAAAGAGGGAATTCCCCCAGACCA 3527176 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | || | ||| ||||| ||||| ||||||| | ||| || | || || || Sbjct 3527175 GCAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGACTACAA 3527116 Query 115465 CATTCAAAAAGAGTCTACTATACAT 115489 ||| || || ||||||||| | ||| Sbjct 3527115 CATCCAGAAGGAGTCTACTCTCCAT 3527091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425306152492120