Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq1527 313 2e-80
seq1168 136 3e-27
seq2599 96.9 3e-15
seq1207 96.9 3e-15
>seq1527
Length=671880
Score = 313 bits (346), Expect = 2e-80
Identities = 604/882 (68%), Gaps = 23/882 (3%)
Strand=Plus/Minus
Query 32177 GCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTGCCGTTG 32236
|| ||||| || || ||||| || || | | || |||||| | ||| ||||| |
Sbjct 504609 GCATATTTCGTCGAGTGGGGTGTATATCCGAGGAAGTTCCCAGTTGACCGTGTGCCAATC 504550
Query 32237 CCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGACTAAAC 32296
|| |||||| | ||| || |||||||||| || || ||||| || || || || | |||
Sbjct 504549 CCGAATTTGACCCATTTGCTGTACGGATTCATCCCAATTTGTGGAGGTGATGGGATCAAC 504490
Query 32297 GATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCAAAGGCC 32354
|| | ||| || | || |||||||| | || ||||||| ||||||| ||||
Sbjct 504489 GACAGTTTGAAA--GAAATCGAAGGCAGTTTCCAAGCTTTGCAACGATCGTGCAGTGGCC 504432
Query 32355 GCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGCAGAAGG 32414
| | |||||| |||||| | ||||||||||| |||||||| | || || || |||||||
Sbjct 504431 GGGAAGACTTCAAGGTTTCGATTCACGACCCGTGGGCCGCTCTCCAGAAGCCACAGAAGG 504372
Query 32415 GCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGGCCAAGT 32474
| ||||| | ||||||||||| ||||||||||||||||| || |||||| | ||
Sbjct 504371 GATTGTCTTCATGGAACGAACCTTACAAAGGCAACTTTGGACAGTTGATGATGTTGAAAC 504312
Query 32475 TGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGGATCCCT 32534
|| || || |||| ||||| || || || || || |||||||| ||| | |||||||
Sbjct 504311 AAGCTAAACCCGACATGAAAATCTTGCCTTCCATCGGTGGGTGGACTTTGGCTGATCCCT 504252
Query 32535 TTTATTTTATGCAC-GACGCGGAAAAACGGCACGTGTTTGTCGATTCCGTCAAAGAGTTT 32593
| | | || | ||| ||| | || | || ||||| | ||| || || || ||
Sbjct 504251 TCT-TCTTCTTCACTGACAAGTCTAAGAGAGACCGATTTGTAGCTTCAGTGAAGGACTTC 504193
Query 32594 TTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGGCGGCAAA 32653
| || ||||| ||||| ||||| || ||||| || ||||||||||| |||||||||
Sbjct 504192 CTCGAGACCTGGAAGTTCTTCGACGGTGTTGACATCGACTGGGAGTTCCCTGGCGGCAAA 504133
Query 32654 GGTGCCAACCCGGCGCT---CGGTAACGGGGAGCGCGACGCGCACACGTACATTATTTTG 32710
||||||||||| || | || | ||| | || | || || |||
Sbjct 504132 GGTGCCAACCCTAACCTTGGCAGTCCCAAGGATGGTGATGTATACGTGTCGCTTA----- 504078
Query 32711 TTACAAGAATTGCGTTCTATGCTGGACGACCT-TCAATTGCAAACGGGCAAAACGTACGA 32769
| ||||| | ||| ||| || | || || ||| || |||| || || | || ||
Sbjct 504077 -TGAAAGAACTTCGTGAAATGTTGAATGAGCTGTCAGCTG-AAACTGGAAAGAAATATGA 504020
Query 32770 GTTGACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGAAGCCGC 32829
| ||||| || || || ||||| |||||||| |||||| | || ||| ||
Sbjct 504019 GCTGACTTCAGCCATCAGCGCCGGTTGGGACAAAATCCAAGTGGTGAACTACAAAGAAGC 503960
Query 32830 GCAAAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGGTCTAA 32889
|| || ||| | ||| | || || |||||||||| ||||| ||||| || ||||| ||
Sbjct 503959 CCAGAAATACATGGATCACATTTTCTTCATGAGTTATGACTTCAAAGGAGCCTGGTCGAA 503900
Query 32890 CACCGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGAATTGTA 32949
| | ||||||| | ||||| | ||||||| || ||||| || | || ||
Sbjct 503899 CGACACTTTGGGCCACCAGACATCACTGTACGCGCCTGCGTGGAAACCAAAGGAGACTTA 503840
Query 32950 CACCACAGATCACGCTGTTAAAT---TGTTAACAAGTCAAGGTGTAGCTTCTTACAAAAT 33006
||| |||||| || ||||||| ||||| | ||| || || | | || ||
Sbjct 503839 CACGACAGATTTCGGAGTTAAATACCTGTTAGC---TCAGGGCGTGAACCCGAAGAAGAT 503783
Query 33007 CATTGTCGGCATCGCCATGTACGGTCGCGGGTGGACGGGCGT 33048
|| |||||| | || |||||||| || || ||||| || ||
Sbjct 503782 AATAGTCGGCGTAGCTATGTACGGCCGTGGTTGGACAGGAGT 503741
>seq1168
Length=7897672
Score = 136 bits (150), Expect = 3e-27
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 109310 TAGCCGAGGCCGGGTTTTATTACACGGGCCAGGGCGATAAAACCAAATGTTTTTATTGTG 109369
|||| || ||||| ||||||||||| ||||| ||||| || || || |||| || ||||
Sbjct 2386401 TAGCTGAAGCCGGTTTTTATTACACCGGCCAAGGCGACAAGACTAAGTGTTACTACTGTG 2386460
Query 109370 ACGGCGGTTTGAAAGACTGGGAGGCGGACGATGAGCCGTGGAAACTGCACGCGCGTTGGT 109429
|||| || ||||||| ||||| ||||||| |||||| | | |||||| |||||||
Sbjct 2386461 ACGGAGGCCTGAAAGATTGGGAAAAAGACGATGTACCGTGGGAGCAGCACGCTCGTTGGT 2386520
Query 109430 TTGACCGTTGCCCTTACGTGTTGCTTGTTAAGGGTCGAGATTATGTGCAAAAAATTGTAA 109489
|||||||||| ||| || | |||||||| || || |||||| | |||| || ||
Sbjct 2386521 TTGACCGTTGTTATTATGTATACCTTGTTAAAGGACGCGATTATATAAAAAAGGTTTTAG 2386580
Query 109490 CGGAATCG 109497
| || |||
Sbjct 2386581 CCGATTCG 2386588
>seq2599
Length=163288
Score = 96.9 bits (106), Expect = 3e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 112403 GTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCATGGTCTTGGTTCGT 112462
|||||| ||||| || | ||||| | | | || || ||||| || ||||| | |||
Sbjct 63344 GTTGCCAAGGTCTCCAATGTGTCTCACTGTAGCATCTGGTGCTCCGTGGTCATTCTTCAG 63403
Query 112463 GGGGTTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTCGCCAAACTCGTGCAC 112522
|||||| || || | |||||||| ||||| ||||| | |||| || |||||||||||
Sbjct 63404 GGGGTTGAAGTGAGCCCCCGCCGAGGTGCAGCCGTTTGTGTTGTCCCCGAACTCGTGCAC 63463
Query 112523 GTGAAAACCGTGC 112535
||| |||||||||
Sbjct 63464 GTGGAAACCGTGC 63476
>seq1207
Length=6027761
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||||||||| ||||| || | || ||||||||||| ||| | ||| ||| ||| |
Sbjct 2998023 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAG-CCATC 2997965
Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|||||| | | | | || || |||||| || || |||||| | ||| || ||
Sbjct 2997964 AGACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCA 2997905
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| || | || | || ||||| || || ||||| | || | |||| || ||
Sbjct 2997904 GCAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACGCTTTCCGACTACAA 2997845
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514
||||||||| ||||||||| ||||| | || || | ||| |||| ||||
Sbjct 2997844 CATTCAAAAGGAGTCTACTCTACATTTAGTATTACGTTTGAGAGGTGGAA 2997795
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || || |||||||| ||||| ||||||||||| || | ||| || ||| |
Sbjct 3526154 ATGCAGATATTCGTCAAAACTCTCACTGGAAAAACCATCACACTAGAAGTAGA-ACCATC 3526096
Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| | | | | || ||| |||||| || ||||| || | ||| || ||
Sbjct 3526095 TGACACAATAGAAAATGTCAAAGCTAAAATTCAGGACAAAGAGGGAATTCCCCCAGACCA 3526036
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| | | || | ||| ||||| ||||| ||||||| | ||| || | || |||||
Sbjct 3526035 GCAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGACTATAA 3525976
Query 115465 CATTCAAAAAGAGTCTACTATACAT 115489
||| || || ||||||||| | |||
Sbjct 3525975 CATCCAGAAGGAGTCTACTCTCCAT 3525951
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || || |||||||| ||||| ||||||||||| || | ||| || ||| |
Sbjct 3527294 ATGCAGATATTCGTCAAAACTCTCACTGGAAAAACCATCACACTAGAAGTAGA-ACCATC 3527236
Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| | | | | || ||| |||||| || ||||| || | ||| || ||
Sbjct 3527235 TGACACAATAGAAAATGTTAAAGCTAAAATTCAGGACAAAGAGGGAATTCCCCCAGACCA 3527176
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| | | || | ||| ||||| ||||| ||||||| | ||| || | || || ||
Sbjct 3527175 GCAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGACTACAA 3527116
Query 115465 CATTCAAAAAGAGTCTACTATACAT 115489
||| || || ||||||||| | |||
Sbjct 3527115 CATCCAGAAGGAGTCTACTCTCCAT 3527091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425306152492120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |