Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1251 524 1e-143 seq1346 123 3e-23 >seq1251 Length=5235866 Score = 524 bits (580), Expect = 1e-143 Identities = 1194/1778 (67%), Gaps = 34/1778 (2%) Strand=Plus/Minus Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899 ||| |||| ||| |||||||| | | || || || || || |||||||| |||||||| Sbjct 3096377 CTTATCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTTGTTCGTAGATAATACATTCC 3096318 Query 61900 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 61959 ||||| ||||| | |||| | ||||| || ||| |||||||| |||| | || Sbjct 3096317 AGTTTTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTGG 3096258 Query 61960 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62019 || |||| ||| ||||| | || || |||||||| ||||| || || |||||||| || Sbjct 3096257 CTCAGCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCGC 3096198 Query 62020 CATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 62078 ||||| || | || || || ||| ||||||| |||||| || || || |||| ||| Sbjct 3096197 CATTTGAATGGTAGTTTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTTA-TAT 3096139 Query 62079 CTTCTGGAA-GGTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 62135 ||| |||| ||||| |||| ||||| |||||| || ||||| ||| || | Sbjct 3096138 CTTTGGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGAATAATGAGATTTTTCA 3096079 Query 62136 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62195 | || |||| ||||| | || |||||| | | | | || |||| || |||| Sbjct 3096078 TATCTTCATCCCATAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACAACTT 3096019 Query 62196 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 62255 | |||||||| || ||||| | | |||||||||| || | || || | ||| | Sbjct 3096018 GGAATTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAAGATT 3095959 Query 62256 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62315 |||| ||||| | ||||| || ||||| ||||| |||||||| || || | || || Sbjct 3095958 CATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGTGAAT 3095899 Query 62316 TTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 62373 | | ||| || ||||| || ||||| ||||| | | | ||| | ||| || || | Sbjct 3095898 TGCGAAGTCC--ATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCCAGAGGTCTGT 3095841 Query 62374 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 62432 || ||||| || || | |||| | | || | | | || Sbjct 3095840 TGGAGTTTTGTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACTACCATG-AT 3095782 Query 62433 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62492 |||| || || || | || || || | ||||||||| |||||||| || ||||||| Sbjct 3095781 ATGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAAT 3095722 Query 62493 AAATGGTTTCGAAGATCTTCTTATTTAGATC--TTGCGCTTCCAGGCTATCAAATGG-AT 62549 |||| ||||| || || | | || || | | || || || || ||| |||| || Sbjct 3095721 AAATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTCA--CTTTCATATGGTAT 3095664 Query 62550 AAT--TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62607 |||| | || | | |||||||||||||| ||||| || || |||||||| || Sbjct 3095663 GCGCATTAATACAA---ATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCTGTG 3095607 Query 62608 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62667 ||| |||| || ||| ||||| || | ||||| ||||| | ||| ||||||||||| Sbjct 3095606 CCTCATATTTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATAATTTTATT 3095547 Query 62668 GAGATTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCC 62723 ||||| | || || ||||| || || || |||||| ||| | | | Sbjct 3095546 TAGATTCTGGGTAACTATCTTTGTG-ACCTCTTTAAGTTTGGTAAAGTTGTAAGTTTTGT 3095488 Query 62724 CATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 62783 |||| | |||||||||||||| |||| |||||| | |||||||| ||| |||| | Sbjct 3095487 CATCATTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGTTTCATCTG 3095428 Query 62784 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 62843 || | ||| | | || || ||||| | || ||||| || || || |||| ||||| Sbjct 3095427 CAGATGTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCCTAGATTTT 3095368 Query 62844 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 62903 ||||||||||| | ||||| |||||||| || | || |||| || |||||||| | Sbjct 3095367 TCTGATTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCCAGTTTCTA 3095308 Query 62904 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCT 62963 || | ||| ||||| |||||||| | | | || || | | | || || | Sbjct 3095307 CTTGTGCTTCAATAATAGCTTTCCACAGTATCTGTGCTTTGACTT--GTTTCACATAACG 3095250 Query 62964 TTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAG 63021 ||| || | || ||| | |||||| || ||||| || ||||| || | | | Sbjct 3095249 TTTTTCCTGTTCATATTTTTCATACAAAGCCTCAAACTCTTCACCCCAGCAATCGGCTAA 3095190 Query 63022 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63081 || ||| | |||| || ||||| | ||| ||| | | | | || |||||||| Sbjct 3095189 ACCTGGAGAATCATGAGGGCACATAATACTCCAATCTTCATTTTTTTCAACACGTTTCAT 3095130 Query 63082 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63141 ||| | ||| |||||||| || || ||| || ||||| | | |||||| || || Sbjct 3095129 AAATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTACTTCCTCTTTACC 3095070 Query 63142 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63201 ||||||||| | ||| || ||| | | ||||||| |||||| ||||| || || | Sbjct 3095069 ATGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGGGTTCTAAATACAC 3095010 Query 63202 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63261 || | | | || |||||||| || || || || || | ||||| || |||||||| || Sbjct 3095009 TGCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGGCAGTGTTATTGTA 3094950 Query 63262 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC 63321 ||| | |||||| || | |||||||| || |||||| || || | || ||| | || Sbjct 3094949 AACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAGCAATGTAGGTGCC 3094890 Query 63322 ACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 |||| | ||| | | | | ||| | ||| || || || || ||||||||| || Sbjct 3094889 TTTGGCTCTAATGCAGTGC-ACATGA-ACACCAATACCACCAGCTGATTTAGAGATCAAA 3094832 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 || || |||| || || ||||| || ||||| || || ||||| |||| || ||| Sbjct 3094831 GCACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCATAGCAACAAGA 3094772 Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499 ||||| ||||| || | | | || | ||| ||| | || ||| || ||| Sbjct 3094771 AAACATGAAGACAACTGTGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTGGACTCGCATGA 3094712 Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 63559 || || |||| ||||| | || |||||| |||| ||| || | || | ||| | Sbjct 3094711 GTGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAACATCTTCACCA 3094652 Query 63560 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63597 || ||||| | | || | ||||||||| ||||| || Sbjct 3094651 TGTATTCCGATAGAAACTCTCATTAACATATGCTGCGG 3094614 Score = 86.0 bits (94), Expect = 8e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 ||||| ||||||||||| | ||||| | || | |||||| |||| ||| ||||||||| Sbjct 3092259 TTTTTGGTTTCTTTGTGCAAGTTTGAGATAGCCAGTCTAGCTGCTAAAATAGCATAATCC 3092200 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||| | || || || |||||| |||| || || | | | |||| |||||| || Sbjct 3092199 GGATGATCAGTTGTCATTGTAGCTGCTGTTTCAGCAGCTAAATTATCCAGTTCTACAGTG 3092140 Query 63941 GTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATT 63982 || || || || ||||| || || |||| || |||| Sbjct 3092139 GTCACCCCTGAGTAGATTCCACTTATCACTTTCAGAGTTATT 3092098 >seq1346 Length=947742 Score = 123 bits (136), Expect = 3e-23 Identities = 109/135 (81%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 33139 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33198 || || |||| |||| ||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 446676 TGTTACCTTT-GATAAATCCACTTCTTCCACCGTCCAAAATGATGCCTCTGCCTTCTTAT 446734 Query 33199 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTG 33258 |||| ||||| ||||| |||| ||||| || || || ||||||| |||| || | Sbjct 446735 ACATTTTCCATATGTCGGGATACTGAATGGGGAATATTACAAATCGTCTTGGGTTGTCCC 446794 Query 33259 CAAGGATTGGTTCCA 33273 ||| | |||||||| Sbjct 446795 GAAGCAATGGTTCCA 446809 Score = 93.3 bits (102), Expect = 5e-14 Identities = 156/225 (69%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||| ||| | ||| ||| || || || || ||||| || || | ||| | Sbjct 445068 CCTCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTTCT 445127 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || ||||| || || || || ||||| || ||||| ||||| ||||| | Sbjct 445128 TCAGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAG 445187 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 32857 | | || || |||||| | ||| ||| || ||||||| ||||| || Sbjct 445188 CCACAATTCGTTCTCCAAATGTGGCA--GTCTTGCTGGCGATCCACTGCAATGCCCAGTC 445245 Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 ||||||||| || || || |||| ||||| || ||||| || || Sbjct 445246 GGCCTTCTTCTTCACGCAGGGCAGGGTCTCAATGGCATTGAACAG 445290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633574173159600