Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq1527 318 6e-82 seq2599 91.5 2e-13 >seq1527 Length=671880 Score = 318 bits (352), Expect = 6e-82 Identities = 596/868 (69%), Gaps = 11/868 (1%) Strand=Plus/Plus Query 51575 CCAGCCGCGAGCGTACATCGCCACGCCGACGACGATCTTCTGATTGCGCACGCCCTGTTC 51634 ||| || || ||||||| || |||||||| | ||||||| | ||||||||| | Sbjct 503749 CCAACCACGGCCGTACATAGCTACGCCGACTATTATCTTCTTCGGGTTCACGCCCTGAGC 503808 Query 51635 GAGAAGCGACGACACGGCATAGTCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGC 51694 | || | || | | || || ||||| | || | || ||||| ||||| Sbjct 503809 TAACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTCTCCTTTGGTTTCCACGCAGGCGC 503868 Query 51695 GAACAGTGTGGTCTGGTAGCCCAGATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTT 51754 | |||||| ||||||| ||||| | | ||| ||||| || || ||||| || || | Sbjct 503869 GTACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGACCAGGCTCCTTTGAAGTCATAACT 503928 Query 51755 CATGAGGAAAATGTAATCCAACTGCGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTT 51814 ||||| |||||||| ||||| | |||| || ||||| || ||||| ||||| Sbjct 503929 CATGAAGAAAATGTGATCCATGTATTTCTGGGCTTCTTTGTAGTTCACCACTTGGATTTT 503988 Query 51815 ATCGTAGCCCGCGCTGATGGCGCTGGTCAACAGGTACGAACGGTTC-GTGGCGGCGCTCA 51873 || | || ||||||||||| |||| | || | | | || | || || Sbjct 503989 GTCCCAACCGGCGCTGATGGCTGAAGTCAGCTCATATTT-CTTTCCAGTTTCAGCTGACA 504047 Query 51874 ACTCGTCGAGCATGTCGCGCAGCTCGGTCAAAAGCGTCACGTACGTCGCACCATCGCGAT 51933 ||| | | ||| || || || || ||| ||||| |||||| ||||||| | Sbjct 504048 GCTCATTCAACATTTCACGAAGTTCTTTCATAAGCGACACGTATACATCACCATCC---T 504104 Query 51934 CGGGATCGCCCAGGTCGGGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGA 51993 |||| ||| |||| || ||||| ||||||||||| || ||||||||||||| ||| | Sbjct 504105 TGGGACTGCCAAGGTTAGGGTTGGCACCTTTGCCGCCAGGGAACTCCCAGTCGATGTCAA 504164 Query 51994 CTCCGTCGAAGAACTTCCAAGTCAGCAGAAACTCGCGAACCGATTCGACGAA--GGTTGC 52051 | ||||||||||||||||| ||| || || || || || | || || ||| | Sbjct 504165 CACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTCCTTCACTGAAGCTACAAATCGGTCTC 504224 Query 52052 GCGTTTGCTCGCGTC-GTGCAGGAAGAAGAACGGATCGGACAGCGTCCAACCGCCGATCG 52110 | | || | || ||| || |||||||| ||||| | || ||||| || ||||| | Sbjct 504225 TCTTAGACTTG--TCAGTGAAG-AAGAAGAAGGGATCAGCCAAAGTCCACCCACCGATGG 504281 Query 52111 AGGGCAGAATCTTGAGCGAAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTC 52170 | |||| || || | || || || |||| | ||||| |||||||||||| | Sbjct 504282 AAGGCAAGATTTTCATGTCGGGTTTAGCTTGTTTCAACATCATCAACTGTCCAAAGTTGC 504341 Query 52171 CCTTGTACGGATCGTTCCAGGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGG 52230 | ||||| || |||||||| | || | || ||||| || ||||| || || ||||| | Sbjct 504342 CTTTGTAAGGTTCGTTCCATGAAGACAATCCCTTCTGTGGCTTCTGGAGAGCGGCCCACG 504401 Query 52231 GATCGTGAATCGTCACCTTAAAGTCCGACCTGCCCACGCACGACCGTTGCAACGCTTCGA 52290 | |||||||||| ||||| ||||| || ||| |||||| |||||||| |||| || Sbjct 504402 GGTCGTGAATCGAAACCTTGAAGTCTTCCCGGCCACTGCACGATCGTTGCAAAGCTTGGA 504461 Query 52291 AACTGTTGTCGATCGGTTTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAATGA 52350 ||||| ||||| ||||| ||||||||||| || || ||||| || || || |||| Sbjct 504462 AACTGCCTTCGATTTCTTTCAAACTGTCGTTGATCCCATCACCTCCACAAATTGGGATGA 504521 Query 52351 AGCCGTACAGCAGATGCGACAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCGCA 52410 | |||||||||| ||| | || ||||| | ||||| | || || || || || | | Sbjct 504522 ATCCGTACAGCAAATGGGTCAAATTCGGGATTGGCACACGGTCAACTGGGAACTTCCTCG 504581 Query 52411 AGTAAACGCCCCATTCGACAAAGTAGGC 52438 || || ||||| ||||| || || || Sbjct 504582 GATATACACCCCACTCGACGAAATATGC 504609 >seq2599 Length=163288 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 127543 GCACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGA 127602 |||||| || ||||||||||||||||| |||| | ||||| ||||| |||||||||| Sbjct 63476 GCACGGTTTCCACGTGCACGAGTTCGGGGACAACACAAACGGCTGCACCTCGGCGGGGGC 63417 Query 127603 ACACTTCAATCCCACCG--GTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTT 127660 |||||||| ||| | | | || || |||||||| || | || || | ||| || Sbjct 63416 TCACTTCAA-CCCCCTGAAGAAT-GACCACGGAGCACCAGATGCTACAGTGAGACACATT 63359 Query 127661 GGCGACCTGGGCAACGTGGAGGC 127683 || ||||| |||||| | ||||| Sbjct 63358 GGAGACCTTGGCAACATCGAGGC 63336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537554136987960