Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1346 152 6e-32 seq1271 134 2e-26 seq1562 132 5e-26 >seq1346 Length=947742 Score = 152 bits (168), Expect = 6e-32 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || ||||| || || | | || ||||| |||||||| ||||| ||||| ||||| ||| Sbjct 446259 ATATATGTGTCAATAAGTAAGGAGTACATCTCAGAATGTACATTTTCCATAGCAATCTGG 446318 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || || ||| |||||||||| || | || || ||||| || ||||| ||||| || Sbjct 446319 AACCCATAAAAAAATCTAGCTTCTGTCACTTGGACCTCTTGTGAGAATCTTTCTACTAGG 446378 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||||||||||| ||||| || ||||| ||||| || | | ||| || || |||||| Sbjct 446379 TTTTCATTGACTATTCCATCTGACGCTGCGAAAAATGCAAGCACATGTTTGATGAAATGT 446438 Query 93542 --TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 ||| || ||||| || ||||||||| |||| ||| Sbjct 446439 CGTTCGCA--GTCTTTCAGTGAATCCCAATCTGATAAATC 446476 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || |||| || |||| ||||||||||| || | || || | || || | ||||| Sbjct 445070 TCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTTCTTC 445129 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||| || || ||||| ||||| || || || || || ||||| || |||||||| ||| Sbjct 445130 AGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAGCC 445189 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 ||||| ||||| |||| | || | || ||| |||||| | || ||||| ||||| Sbjct 445190 ACAATTCGTTCTCCAAATGTGGCAGTCTTGCTGGCGATCCACTGCAATGCCCAGTCGGCC 445249 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 || ||||| | || || || || || || || || || ||| Sbjct 445250 TTCTTCTTCACGCAGGGCAGGGTCTCAATGGCATTGAACAGG 445291 >seq1271 Length=517403 Score = 134 bits (148), Expect = 2e-26 Identities = 86/93 (92%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 44899 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 44840 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 |||||||||||||||||||||||||| ||| || Sbjct 44839 GTGGGTTCGAACCCCACACCTGACAAGTTAATA 44807 >seq1562 Length=824124 Score = 132 bits (146), Expect = 5e-26 Identities = 121/147 (82%), Gaps = 8/147 (5%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 369295 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 369236 Query 126324 TGGGTTCGAACCCCACACCTGACAAA--TTAT-TATTGGAATTTTTGTTGCGGTTGGGAC 126380 |||||||||||||||||||||||||| | || | || | |||||| || || | | Sbjct 369235 TGGGTTCGAACCCCACACCTGACAAAAGTGATCTTTTTGTATTTTTTTT--ATTTAGAAT 369178 Query 126381 TTAAATAAAAATCATGCTATGATAATA 126407 || ||||||| | || ||||| |||| Sbjct 369177 TTTAATAAAAGTTATATTATGA-AATA 369152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556809979491240