Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1168 125 6e-24 seq1207 107 2e-18 seq3248 91.5 1e-13 seq1889 91.5 1e-13 seq1459 91.5 1e-13 >seq1168 Length=7897672 Score = 125 bits (138), Expect = 6e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 105483 CAAAGGCCAGAGCAATTGGCCGAAGCCGGTTTTTACTACACCGGCAAAGGTGATAAAGTC 105542 |||| ||| || | || || |||||||||||||| ||||||||| |||| || || Sbjct 2386385 CAAAAGCCGGAAGATTTAGCTGAAGCCGGTTTTTATTACACCGGCCAAGGCGACAAGACT 2386444 Query 105543 AAATGTTTTTATTGCGACGGCGGCCTTAAGGATTGGGCAAACGCCGACGAACCGTGGGAG 105602 || |||| || || ||||| ||||| || ||||||| ||| | ||| | |||||||||| Sbjct 2386445 AAGTGTTACTACTGTGACGGAGGCCTGAAAGATTGGGAAAAAGACGATGTACCGTGGGAG 2386504 Query 105603 GAACATGCACGTTGGTTTGATCGCTGTTCGTTCGTAAAACTGGTCAAAGGACACGACTA 105661 | || || ||||||||||| || |||| | ||| | || || ||||||| ||| || Sbjct 2386505 CAGCACGCTCGTTGGTTTGACCGTTGTTATTATGTATACCTTGTTAAAGGACGCGATTA 2386563 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 105111 ACATACGTTAACTGGCCCGTGTCATTTTTGGAACCAAGTCAAATGGCCGCCAACGGGTTC 105170 |||| ||| || ||||| || ||||| | |||| || | || |||||| || Sbjct 2386025 ACATTCGTCAATTGGCCTGTCCCATTTCTATCACCACTAAAACTAGCTCGCAACGGTTTT 2386084 Query 105171 TACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAAATAATGCGC 105230 || |||||||| |||||||| | || || || || |||||||| || ||| | Sbjct 2386085 TATTATTTGGGAAAAAATGACGAAGTTAGGTGTGCTTTTTGTAAAGTGGAGATTATGAGG 2386144 Query 105231 TGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAGTGCCCGTTT 105290 ||| |||| |||||||| || ||| ||| ||| | || ||||||||||| |||||| | Sbjct 2386145 TGGATGGAAGGCGACGATCCAGCCAAAGACCATCAGCGGTGGGCGCCACAATGCCCGCTA 2386204 Query 105291 TTGCGAAA 105298 || || || Sbjct 2386205 TTACGCAA 2386212 >seq1207 Length=6027761 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||| ||||| || || || |||| || ||||||||||| ||||| |||||| Sbjct 3528209 AAAATGCAGATTTTCGTTAAGACCTTGACTGGTAAAACCATTACATTGGAAGTTGAACCC 3528150 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| | | | | |||||| ||||| |||||||||||| |||| ||| Sbjct 3528149 TCTGATACAATCGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCGCCTGAT 3528090 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || || | || || | || || ||||| |||||||| | || | |||| || Sbjct 3528089 CAGCAGCGCCTGATCTTCGCTGGAAAACAGTTGGAAGACGGTCGCACCCTCTCCGACTAC 3528030 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 ||||| ||||| ||||| || || || || ||| ||||||| || ||||||| Sbjct 3528029 AATATTCAAAAGGAATCAACCCTTCACTTGGTGCTGCGTCTCCGTGGTGGCA 3527978 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||||||||| || ||||| || || |||| || || || |||||| ||||| || || Sbjct 2996689 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 2996630 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 ||| || ||| | || ||| || ||| || ||||| || | || || Sbjct 2996629 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 2996570 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGAT 111360 ||| || | || || | || ||||| || |||||||| | | ||||| ||||| Sbjct 2996569 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTAT--CCGAT 2996512 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || ||||||||||| || ||||| || ||||| || || ||||| Sbjct 2996511 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCGCCTCCGTGGTGG 2996459 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||||||||| || ||||| || || |||| || || || |||||| ||||| || || Sbjct 2998255 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 2998196 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 ||| || ||| | || ||| || ||| || ||||| || | || || Sbjct 2998195 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 2998136 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGAT 111360 ||| || | || || | || ||||| || |||||||| | | ||||| ||||| Sbjct 2998135 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTAT--CCGAT 2998078 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || ||||||||||| || ||||| || ||||| || || ||||| Sbjct 2998077 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCGCCTCCGTGGTGG 2998025 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| ||||| || ||||||| |||||||| ||| | ||| || || Sbjct 2996457 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAGCCATCA 2996398 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || | | | || || |||||| ||||| |||||| |||| || || Sbjct 2996397 GACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCTCCAGACCAG 2996338 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | || | || ||||| || ||||||||| || | ||||||| ||| Sbjct 2996337 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGATGGACGCACGCTTTCCGATTACAAT 2996278 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| |||||||| || || || || ||||||| || ||||| Sbjct 2996277 ATTCAAAAGGAATCTACTCTTCACTTGGTACTGCGTCTTCGTGGTGG 2996231 >seq3248 Length=8693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 95836 CTGCGCTTGCAACTCAATTTGCGGGTTCCAATGCGGTTCCAACATGATAATGTGGTTGCC 95895 |||||||||| ||| | ||||||||||| ||||| ||||||| || | ||||||| | Sbjct 8686 CTGCGCTTGCTCCTCCAGCTGCGGGTTCCAGTGCGGGTCCAACAGGAGCAGGTGGTTGGC 8627 Query 95896 GCCGGTTAAATTCAGACCTACGCCGCCG 95923 |||| |||||| ||||||||||||||| Sbjct 8626 GCCGCATAAATTGAGACCTACGCCGCCG 8599 >seq1889 Length=140810 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||||||||| || ||||| || || |||| || || || |||||| ||||| || || Sbjct 27459 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 27518 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 ||| || ||| | || ||| || ||| || ||||| || | || || Sbjct 27519 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 27578 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGAT 111360 ||| || | || || | || ||||| || |||||||| | | ||||| ||||| Sbjct 27579 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTAT--CCGAT 27636 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || ||||||||||| || ||||| || ||||| || || ||||| Sbjct 27637 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCGCCTCCGTGGTGG 27689 >seq1459 Length=1092699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 95804 TGCTTCTTTTGACCCATGCGATGAATGCGGCTCTGCGCTTGCAACTCAATTTGCGGGTTC 95863 || ||||| || |||| ||| | || | |||||||||| ||| | ||||||||| Sbjct 75859 TGTTTCTTCTGCCCCACGCGGTATATTCTATCCTGCGCTTGCTCCTCCAGCTGCGGGTTC 75800 Query 95864 CAATGCGGTTCCAACATGATAATGTGGTTGCCGCCGGTTAAATTCAGACCTACGCCGCCG 95923 || ||||| ||||| | || | ||||||| ||||| |||||| ||||||||||||||| Sbjct 75799 CAGTGCGGGTCCAAAAGGAGCAGGTGGTTGGCGCCGCATAAATTGAGACCTACGCCGCCG 75740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423002357504200