Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1527 244 8e-60 seq1889 105 5e-18 seq1207 105 5e-18 seq1196 93.3 3e-14 >seq1527 Length=671880 Score = 244 bits (270), Expect = 8e-60 Identities = 784/1205 (65%), Gaps = 31/1205 (3%) Strand=Plus/Plus Query 83553 TTCATCGCGTTGAGCAAATCGCCGTTGTCGGCATCGATCTCCCAAGCAAACAGGCCGCCT 83612 ||||| || ||||| | |||||| ||||| ||||| || |||||||| || || || ||| Sbjct 503435 TTCATTGCATTGAGTATATCGCCATTGTCCGCATCTATTTCCCAAGCGAATAGACCACCT 503494 Query 83613 AGTTTGTTTCGATCGACATATTTAACCTTTCCTAAAACAGAATCGACGCTGTCGTACGAA 83672 | || || | ||||| || |||| | | || || | | ||||| | Sbjct 503495 AACTTATTACTTCTCACATACTTCCCCTTCTCAATGACTGATCTGGCATCATCGTAAGTT 503554 Query 83673 ATTAAATCGCCTTTGTTTTTATTGAAAACGTATGACGCTTGAGCTGCGCTGTC--AAACG 83730 || || || || | | |||||||||| | |||||| || || |||| || | Sbjct 503555 ATCAAGTCTCCAGTCGCTGGTCTGAAAACGTAAGGCGCTTGGGCGACGTTGTCGTAATGG 503614 Query 83731 TATACACATAATTG--TTGAGTT----CGTTTTGAATTTGACGATAATCTACAACGCCAT 83784 || | ||| ||| ||||| | | ||| ||| | | |||||| || || |||| Sbjct 503615 TACTCCCAT--TTGCCTTGAGCTATCTCATTTGCAATGTCTCTATAATCAACGACACCAT 503672 Query 83785 CCTCCCACGTGCCCGGTATTGGCCCGTTGCCAGTTCCGGTAAA---ATAGTTATCATTCG 83841 | | ||| | || || || || || | || ||||| || ||| || | Sbjct 503673 CTTGCCAAGAACCTTTGCAGGGACCTGTGGCATTACCAGTAAATGGATTGTTGTCT---G 503729 Query 83842 TATAATTTGTTAGGCCGGTCCAACCGCGGCCGTACATGGCAACGCCAATAATTATTTTGT 83901 | || || | || |||||||| ||||||||||| || ||||| | ||||| || | Sbjct 503730 TGTAGTTCTGAACTCCTGTCCAACCACGGCCGTACATAGCTACGCCGACTATTATCTTCT 503789 Query 83902 TGGGATCAACACCCTGTTTAAGTAGCACACTGACAGCGTGATGTGTGGTGTATAACTCTT 83961 | || | || ||||| | || | || || || ||| ||||| ||| | Sbjct 503790 TCGGGTTCACGCCCTGAGCTAACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTCTCCT 503849 Query 83962 CCGAGTTCCAACTCGGCGCGTAAATTGTGGTTTGGTAGCCCAAATCCGTGTTTGACCAAG 84021 | ||||| |||||||| | || || |||| ||||||| ||| ||||| | Sbjct 503850 TTGGTTTCCACGCAGGCGCGTACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGACCAGG 503909 Query 84022 CACCTTTAAAATCATAATTCATTAAAAATATTTTTCCTAAAGACTTTTGCGCCTCGTCAT 84081 | ||||| || |||||| |||| || || || | | | | || || || || | | Sbjct 503910 CTCCTTTGAAGTCATAACTCATGAAGAAAATGTGATCCATGTATTTCTGGGCTTCTTTGT 503969 Query 84082 AGTTTACCACGGCAATCTTGTCGTAACCCGCACTAATAGCGCTTGTTAATTCGTAAACCC 84141 |||| ||||| || ||||| |||| || || || || || | || || | Sbjct 503970 AGTTCACCACTTGGATTTTGTCCCAACCGGCGCTGATGGCTGAAGTCAGCTCATATTTCT 504029 Query 84142 TGCCAGTTTGCGATTCTAGCTCGTCTAACATTGCGCGCAGTTCCTCTAATATTAAAATGT 84201 | ||||||| | | ||||| | |||||| | || ||||| | | | | | || Sbjct 504030 TTCCAGTTTCAGCTGACAGCTCATTCAACATTTCACGAAGTTCTTTCATAAGCGACACGT 504089 Query 84202 ATGTTTTGGCGTCACGTTCA--GCATCCCCCAACGAC-GGGTTGGCTCCTTTGCCTCCCG 84258 || | |||| || | | |||| | |||||||| |||||||| || | Sbjct 504090 ATA------CATCACCATCCTTGGGACTGCCAAGGTTAGGGTTGGCACCTTTGCCGCCAG 504143 Query 84259 GAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTCCATACTTGTAAAAACTCCTTAA 84318 | || ||||| |||||||| ||||||||||| || ||||| | | || ||||| | Sbjct 504144 GGAACTCCCAGTCGATGTCAACACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTCCTTCA 504203 Query 84319 CCGAATTTACAAAAACGTTTCTTTTTTCAACATTGTGCATGAA--ATAAAACGGG-TCCG 84375 | ||| |||||| || ||| || || |||| |||| | || | ||| || | Sbjct 504204 CTGAAGCTACAAATCGGTCTCTCTTAG--AC-TTGTCAGTGAAGAAGAAGAAGGGATCAG 504260 Query 84376 ACAACGTCCATCCTCCTATGGACGGAAGAATCTTTAGGTGCGGGTTCGCCAATTTAGCTG 84435 ||| ||||| || || ||||| || | || || | || || || || ||| Sbjct 504261 CCAAAGTCCACCCACCGATGGAAGGCAAGATTTTCATGTCGGGTTTAGCTTGTTTCAACA 504320 Query 84436 CCATCAATTGTCCAAAATTGCCTTTATACGGTTCGTTCCAAGCGGACACGCCCTTTTGGG 84495 |||||| |||||||| |||||||| || ||||||||||| | |||| ||||| || | Sbjct 504321 TCATCAACTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCATGAAGACAATCCCTTCTGTG 504380 Query 84496 GCTTTTGTACGGCGGCCCACGGATCGTGGATGGCAATTTTAAAATCCGCACGTCCCCTGC 84555 |||| || | ||||||||||| ||||| || | || || || || | || || |||| Sbjct 504381 GCTTCTGGAGAGCGGCCCACGGGTCGTGAATCGAAACCTTGAAGTCTTCCCGGCCACTGC 504440 Query 84556 ACGATCGTTGCAGAGATTCGAAACTACCGGGTATCACTTTGAGAGCATCGTTTATTCCAT 84615 |||||||||||| || || |||||| || || |||| | | ||||| || |||| Sbjct 504441 ACGATCGTTGCAAAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATCCCAT 504500 Query 84616 TACCGCCGCAAATGGGTATGAAACCGTACAACAAGTGTGATAAATTTGGCAAGGGAACTT 84675 ||| || ||||| || ||||| ||||||| ||| || | ||||| || | || || Sbjct 504501 CACCTCCACAAATTGGGATGAATCCGTACAGCAAATGGGTCAAATTCGGGATTGGCACAC 504560 Query 84676 TGTCTACGGGAAAATTGCGCCCGTACACTCCCCATTCAACAAAATACGCAGCAACCGTTT 84735 ||| || || || || | | || || ||||| || || ||||| || | ||| || Sbjct 504561 GGTCAACTGGGAACTTCCTCGGATATACACCCCACTCGACGAAATATGCGCCCACCACTT 504620 Query 84736 TATCG 84740 || || Sbjct 504621 TACCG 504625 >seq1889 Length=140810 Score = 105 bits (116), Expect = 5e-18 Identities = 170/240 (71%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 21812 TATTTATAA-GTAATAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCA 21870 |||||||| || | || | |||||||| || ||| | || ||||| ||||| || || | Sbjct 27441 TATTTATATTGTTACAG-GAAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTA 27499 Query 21871 TTACCGTGGAAACGGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATA 21930 ||||| ||||| || | | || || | | || |||| || ||| |||| Sbjct 27500 TTACCTTGGAAGTAGAGCCTTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATA 27559 Query 21931 AAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATT 21990 ||||||| | ||| | || ||| |||| ||||| || ||||| || | ||||| Sbjct 27560 AAGAGGGAATCCCTCCTGATCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACG 27619 Query 21991 TA--AAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 | | ||||| ||||||||||||||||||| |||||||| |||||| ||||||| || Sbjct 27620 GACGCACACTAT--CCGATTACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCG 27677 >seq1207 Length=6027761 Score = 105 bits (116), Expect = 5e-18 Identities = 170/240 (71%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 21812 TATTTATAA-GTAATAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCA 21870 |||||||| || | || | |||||||| || ||| | || ||||| ||||| || || | Sbjct 2996707 TATTTATATTGTTACAG-GAAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTA 2996649 Query 21871 TTACCGTGGAAACGGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATA 21930 ||||| ||||| || | | || || | | || |||| || ||| |||| Sbjct 2996648 TTACCTTGGAAGTAGAGCCTTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATA 2996589 Query 21931 AAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATT 21990 ||||||| | ||| | || ||| |||| ||||| || ||||| || | ||||| Sbjct 2996588 AAGAGGGAATCCCTCCTGATCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACG 2996529 Query 21991 TAA--AAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 | | ||||| ||||||||||||||||||| |||||||| |||||| ||||||| || Sbjct 2996528 GACGCACACTAT--CCGATTACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCG 2996471 Score = 105 bits (116), Expect = 5e-18 Identities = 170/240 (71%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 21812 TATTTATAA-GTAATAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCA 21870 |||||||| || | || | |||||||| || ||| | || ||||| ||||| || || | Sbjct 2998273 TATTTATATTGTTACAG-GAAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTA 2998215 Query 21871 TTACCGTGGAAACGGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATA 21930 ||||| ||||| || | | || || | | || |||| || ||| |||| Sbjct 2998214 TTACCTTGGAAGTAGAGCCTTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATA 2998155 Query 21931 AAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATT 21990 ||||||| | ||| | || ||| |||| ||||| || ||||| || | ||||| Sbjct 2998154 AAGAGGGAATCCCTCCTGATCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACG 2998095 Query 21991 TAA--AAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 | | ||||| ||||||||||||||||||| |||||||| |||||| ||||||| || Sbjct 2998094 GACGCACACTAT--CCGATTACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCG 2998037 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || ||||| || || |||||||| ||| | ||| || | || Sbjct 2996457 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAGCCATCA 2996398 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| |||||| || || || || | ||| | |||| Sbjct 2996397 GACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCTCCAGACCAG 2996338 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| || | ||||| || ||||| || | |||||| | || | ||||||||||| Sbjct 2996337 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGATGGACGCACGCTTTCCGATTACAAT 2996278 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| ||||||||||||||||| ||||| | ||| | || || ||| Sbjct 2996277 ATTCAAAAGGAATCTACTCTTCACTTGGTACTGCGTCTTCGTGGTGGA 2996230 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || ||||| || || |||||||| ||| | ||| || | || Sbjct 2998023 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAGCCATCA 2997964 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| |||||| || || || || | || | |||| Sbjct 2997963 GACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAG 2997904 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| || | ||||| || ||||| || | ||||| | || | |||| ||||| Sbjct 2997903 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACGCTTTCCGACTACAAC 2997844 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| ||||| |||||||| ||| | ||||||||||| |||| ||| Sbjct 2997843 ATTCAAAAGGAGTCTACTCTACATTTAGTATTACGTTTGAGAGGTGGA 2997796 >seq1196 Length=1288689 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 || |||||| || || | |||||| | ||||| || ||||| ||| | || |||||| Sbjct 730406 CACAATGCAGATCTTCGTAAAAACACTTACGGGGAAGACCATCACCCTTGAGGTGGAAGC 730347 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || | || |||||| ||||| || ||| | ||| | Sbjct 730346 TTCTGACACCATCGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCGGA 730287 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||| ||| |||||||||| |||||||||||||| |||||| || || | || || Sbjct 730286 CCAGCAGCGACTTATCTTCGCTGGCAAACAACTGGAAGATGGCCGCACATTGTCAGACTA 730227 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||| ||||| || || | || |||| || | || ||||||| Sbjct 730226 CAATATTCAAAAGGAGTCCACCTTGCACTTGGTGCTAAGATTGAGAGGAGG 730176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358092933719554