Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_008953.1
Length=3935
Score E
Sequences producing significant alignments: (Bits) Value
seq1265 102 2e-18
>seq1265
Length=1663547
Score = 102 bits (112), Expect = 2e-18
Identities = 271/410 (66%), Gaps = 8/410 (2%)
Strand=Plus/Minus
Query 3140 TGGATTATTTTTTCATGCAGCTGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCT 3199
||||||| ||| || | || ||| | ||||||| |||||| | | || ||| |
Sbjct 43074 TGGATTACTTTCACACTAATCTTCACACTCAAAACTTTTACGCGTTCCGATTCTTCATTT 43015
Query 3200 GCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAG 3259
| || |||| |||||| ||||||| |||| || || | ||||||| | || | |
Sbjct 43014 GTGAAGTGCTGAACTTTATCAACGTGGTCGGCCAAATTTTCTTCATGGACTTTTTCCTCG 42955
Query 3260 GCGAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAG--GAAGCCGCCCA 3317
|| || |||| |||||| | ||| | |||| || | |||||
Sbjct 42954 ACGGCGAGTTTTCCACCTACGGAGCGGACGTTGTCCGTTTCACTGAGATGGAGCCGGAG- 42896
Query 3318 TCCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCA 3377
|||| || || ||| ||| | || || || | | | ||| |||||| || ||
Sbjct 42895 ---GAACGCGAGGA-CCCGATGGCTAGGGTGTTCCCTAAAGTGACTAAATGTACATTCCA 42840
Query 3378 CAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAA 3437
|||||||||||| ||||| || || | |||| ||| ||||| || | || || |||
Sbjct 42839 CAAATACGGTCCCTCGGGAACCGTGCAGAACTTCGACGGACTGTGTGTACTGCCTCTGAA 42780
Query 3438 CGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATCAT 3497
| | ||||| ||||||||||| | ||||| |||||||||||| | ||| | ||| |
Sbjct 42779 CATCGTCAATGAGAAGATCTATGTGTTCCTGTGGTTCTGGTTCGTGATCCTATCGATCCT 42720
Query 3498 CAGCGGTATCGTTGTTCTGTACCGCATTGCTCTGCTAGCGTCCCCTGCGC 3547
|| || || | | | |||||||| ||| || | ||| ||| ||||
Sbjct 42719 GAGTGGAATTTCTCTGATCTACCGCATGGCTGTGGTGGCGGGCCC-GCGC 42671
Score = 84.2 bits (92), Expect = 5e-13
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 3410 ACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCT 3469
|||| | ||| ||||||||||| |||||| |||||||| ||||||||| | |||||||
Sbjct 204461 ACGACGCACTGTGCATCCTCCCACTGAACGTAGTCAACGAAAAGATCTACGTGTTCCTCT 204402
Query 3470 GGTTCTGGTTC 3480
|||||||||||
Sbjct 204401 GGTTCTGGTTC 204391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 12479003413500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |