Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq1265 102 2e-18 >seq1265 Length=1663547 Score = 102 bits (112), Expect = 2e-18 Identities = 271/410 (66%), Gaps = 8/410 (2%) Strand=Plus/Minus Query 3140 TGGATTATTTTTTCATGCAGCTGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCT 3199 ||||||| ||| || | || ||| | ||||||| |||||| | | || ||| | Sbjct 43074 TGGATTACTTTCACACTAATCTTCACACTCAAAACTTTTACGCGTTCCGATTCTTCATTT 43015 Query 3200 GCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAG 3259 | || |||| |||||| ||||||| |||| || || | ||||||| | || | | Sbjct 43014 GTGAAGTGCTGAACTTTATCAACGTGGTCGGCCAAATTTTCTTCATGGACTTTTTCCTCG 42955 Query 3260 GCGAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAG--GAAGCCGCCCA 3317 || || |||| |||||| | ||| | |||| || | ||||| Sbjct 42954 ACGGCGAGTTTTCCACCTACGGAGCGGACGTTGTCCGTTTCACTGAGATGGAGCCGGAG- 42896 Query 3318 TCCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCA 3377 |||| || || ||| ||| | || || || | | | ||| |||||| || || Sbjct 42895 ---GAACGCGAGGA-CCCGATGGCTAGGGTGTTCCCTAAAGTGACTAAATGTACATTCCA 42840 Query 3378 CAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAA 3437 |||||||||||| ||||| || || | |||| ||| ||||| || | || || ||| Sbjct 42839 CAAATACGGTCCCTCGGGAACCGTGCAGAACTTCGACGGACTGTGTGTACTGCCTCTGAA 42780 Query 3438 CGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATCAT 3497 | | ||||| ||||||||||| | ||||| |||||||||||| | ||| | ||| | Sbjct 42779 CATCGTCAATGAGAAGATCTATGTGTTCCTGTGGTTCTGGTTCGTGATCCTATCGATCCT 42720 Query 3498 CAGCGGTATCGTTGTTCTGTACCGCATTGCTCTGCTAGCGTCCCCTGCGC 3547 || || || | | | |||||||| ||| || | ||| ||| |||| Sbjct 42719 GAGTGGAATTTCTCTGATCTACCGCATGGCTGTGGTGGCGGGCCC-GCGC 42671 Score = 84.2 bits (92), Expect = 5e-13 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 3410 ACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCT 3469 |||| | ||| ||||||||||| |||||| |||||||| ||||||||| | ||||||| Sbjct 204461 ACGACGCACTGTGCATCCTCCCACTGAACGTAGTCAACGAAAAGATCTACGTGTTCCTCT 204402 Query 3470 GGTTCTGGTTC 3480 ||||||||||| Sbjct 204401 GGTTCTGGTTC 204391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479003413500