Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq1376 86.0 5e-12 seq1468 82.4 6e-11 seq1424 82.4 6e-11 >seq1376 Length=188996 Score = 86.0 bits (94), Expect = 5e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 108883 GCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCC 108942 ||| |||| || || ||||||||||||||||||||||| |||| ||||||||||| ||| Sbjct 150197 GCTTTCGGTGAAGGTTGGCACAACTACCACCACGTGTTTCCCTGGGACTACAAGGCGGCC 150138 Query 108943 GAGTTGGGGAACGAC 108957 ||| |||| ||| || Sbjct 150137 GAGCTGGGCAACTAC 150123 >seq1468 Length=114838 Score = 82.4 bits (90), Expect = 6e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 108487 CACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTC 108546 ||||||||||| | |||||| || ||||| |||||||| | ||||| | | | | Sbjct 109155 CACCACAAGTATGCGGACACGGACGCGGACCCCCACAACGCGGAGAGGGGCCTGTTCTAC 109096 Query 108547 TCGCACGTGGGATGGCTCATGATG-ACCAAGGACCCCGACGTGATCTCGGCCGGTCGAAA 108605 |||||| |||| |||||| || || | ||| |||||| |||||| || ||| || | Sbjct 109095 TCGCACATGGGGTGGCTC-TGCTGCAAGAAGACCCCCGAGGTGATCGAGGGCGGCCGCAG 109037 Query 108606 AATGGACATGACGGACATATACTCCGATCCGGTGGTAGTGTGGCACACCAAGTA 108659 || ||| | || ||| | || | ||||||||||| ||| || | ||||| Sbjct 109036 GATCGACCTCACCGACCTCTATGCGGATCCGGTGGTTATGTTCCAGAAAAAGTA 108983 >seq1424 Length=100114 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 108447 ACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC 108506 ||||||||| || | ||||||| ||| ||| | || ||||| |||| ||| || | Sbjct 50720 ACAGAACACAATATACAACTGGGTGCGCGACCACCGCGTCCACCATAAGTTCTCCGAATC 50779 Query 108507 GACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCAT 108566 | || || || ||| | |||| | ||||||| ||||| ||||| || |||||||| Sbjct 50780 ATCAGCTGATCCCCACGATGCCAGACGAGGGTTCTTCTTCTCTCACGTCGGCTGGCTCAT 50839 Query 108567 GATGACCAAGGACCCCGACGTGATCTCGGCCGGTCGAAAAATGGACATGACGGACATATA 108626 ||||| || |||| | |||| || || || || || ||||||| || || | Sbjct 50840 GATGAAGAAACACCCTGCCGTGCTCAAGGAAGGAGCTAAGATTGACATGAGTGATATCAA 50899 Query 108627 CTCCGATCCGGTGGTAGTGTGGCACACCAAGTA 108659 |||||| | ||| || ||||| ||||| Sbjct 50900 AAACGATCCCCTTGTACGGTTTCACACGAAGTA 50932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381738829498344