Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1527 239 4e-58 seq1207 111 2e-19 seq1196 111 2e-19 seq2599 93.3 4e-14 >seq1527 Length=671880 Score = 239 bits (264), Expect = 4e-58 Identities = 355/501 (71%), Gaps = 2/501 (0%) Strand=Plus/Minus Query 27995 aaaaTTGTGGCCGCCTATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTCCCGTCGAC 28054 ||| | |||| ||| ||||||||||||||||| || |||| | || |||| || || ||| Sbjct 504621 AAAGTGGTGGGCGCATATTTCGTCGAGTGGGGTGTATATCCGAGGAAGTTCCCAGTTGAC 504562 Query 28055 AAAGTGCCCGCGCCCAACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGC 28114 ||||| || || || | || ||||||||||| ||| | || || || || || Sbjct 504561 CGTGTGCCAATCCCGAATTTGACCCATTTGCTGTACGGATTCATCCCAATTTGTGGAGGT 504502 Query 28115 GACGGCATAAACGACGCCCTCAAGACCGTTCCCGGCAGTTTCGAGGCGCTGCAGCGCTCG 28174 || || || |||||| | || | ||||||||| | || |||| || ||| Sbjct 504501 GATGGGATCAACGACAGTTTGAAAGAAATCGAAGGCAGTTTCCAAGCTTTGCAACGATCG 504442 Query 28175 TGCGCCGGGCGCGCCGACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAAG 28234 ||| || || | ||||||||||| |||| ||||| || |||||||| | |||||| Sbjct 504441 TGCAGTGGCCGGGAAGACTTCAAGGTTTCGATTCACGACCCGTGGGCCGCTCTCCAGAAG 504382 Query 28235 CCGCAAAAGGGCGTCTCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGATG 28294 || || ||||| | ||| | |||||||| || ||||||||||||||||| || |||||| Sbjct 504381 CCACAGAAGGGATTGTCTTCATGGAACGAACCTTACAAAGGCAACTTTGGACAGTTGATG 504322 Query 28295 AGCGTCAAATTAGCCAATCCGCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACGCTG 28354 | | ||| ||| || || || |||| | || | || ||||| || ||||| || Sbjct 504321 ATGTTGAAACAAGCTAAACCCGACATGAAAATCTTGCCTTCCATCGGTGGGTGGACTTTG 504262 Query 28355 TCGGACCCATTCTTTCACATGCAC-GACGCGACCGTGCGCCAAACGTTCATCGATTCCGT 28413 | || || ||| ||| | ||| ||| | | | | | || | | ||| || Sbjct 504261 GCTGATCCCTTC-TTCTTCTTCACTGACAAGTCTAAGAGAGACCGATTTGTAGCTTCAGT 504203 Query 28414 CGTGGACTTTCTGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAGTTTCC 28473 |||||| || ||||||||||||||||||||| || |||||||| |||||||| || Sbjct 504202 GAAGGACTTCCTCGAGACCTGGAAGTTCTTCGACGGTGTTGACATCGACTGGGAGTTCCC 504143 Query 28474 GGGCGGCAAAGGAGCCAATCC 28494 ||||||||||| ||||| || Sbjct 504142 TGGCGGCAAAGGTGCCAACCC 504122 >seq1207 Length=6027761 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||||| ||| | | |||||||| || ||||||||||| Sbjct 3527751 GCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3527810 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || | ||| || || | | |||| | |||||| ||||| || || Sbjct 3527811 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 3527870 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || |||||||| ||| |||||| ||| | | || | |||||| | | ||||| Sbjct 3527871 AATTCCCTCTTTGTC-CTGAATTTTTGCTTTGACATTCTCAATGGTGTCTGAAGGCTCCA 3527929 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | ||||| ||||| ||||||||||| || ||||||||| Sbjct 3527930 CTTCAAGTGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATG 3527979 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | || || ||||| |||||||| || Sbjct 3525244 CCACCACGAAGACGGAGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAG 3525303 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || | ||||||||| | |||| |||||||||||||| ||||| Sbjct 3525304 AGGGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGG 3525363 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| |||| | ||||| | ||| | ||||| | | ||| || Sbjct 3525364 ATACCCTCCTTGTC-CTGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAAC 3525422 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||||||||| | |||||| ||||| ||||||||| Sbjct 3525423 TTCTAAAGTTATAGTTTTACCAGTTAAAGTTTTCACAAATATCTGCATG 3525471 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| || |||||||||| | |||||||||||||||||||||||| Sbjct 2997797 CCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAA 2997856 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || | || || || | |||| | ||||| ||||| || || Sbjct 2997857 AGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGA 2997916 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | |||| | ||| | ||||| | | ||| || Sbjct 2997917 ATGCCTTCCTTGTC-TTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTAC 2997975 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || |||| || || || ||||| ||||| Sbjct 2997976 TTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || ||||| |||| || || || | | ||||||||||||| || || ||||| Sbjct 3525699 GCCACCACGCAAGCGCAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTATAGTCTGA 3525758 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || | || || || | |||| | |||||| ||||| || || Sbjct 3525759 GAGAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 3525818 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCA 138565 || || |||||||| ||| |||| | ||||| | || | |||||| | | |||| Sbjct 3525819 AATTCCCTCTTTGTCC-TGAATTTTAGCTTTAACATTCTCGATGGTGTCAGAAGGTTCCA 3525877 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | ||||| ||||| || || || ||||||||||||||| Sbjct 3525878 CTTCAAGTGTGATGGTTTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3525927 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || || || | | |||| ||||||||||| ||||||||| Sbjct 3527979 GCCACCACGGAGACGCAGCACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGA 3528038 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||| || | ||||| || | |||| || ||||| || || || || Sbjct 3528039 GAGGGTGCGACCGTCTTCCAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGG 3528098 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| |||||| ||||| | ||| | || || | | || || Sbjct 3528099 AATGCCTTCTTTGTCTTGGATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAAC 3528158 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||||| || || || ||||||||||| Sbjct 3528159 TTCCAATGTAATGGTTTTACCAGTCAAGGTCTTAACGAAAATCTGCAT 3528206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||||| ||| | | |||||||| || ||||||||||| Sbjct 3527067 GCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3527126 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || | ||| || || | | |||| | |||||| ||||| || || Sbjct 3527127 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 3527186 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || |||||||| ||| |||| | ||||| | ||| | ||||| | | || | Sbjct 3527187 AATTCCCTCTTTGTC-CTGAATTTTAGCTTTAACATTTTCTATTGTGTCAGATGGTTCTA 3527245 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||| ||||| |||||||| || || |||||||| Sbjct 3527246 CTTCTAGTGTGATGGTTTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3527294 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||||| ||| | | |||||||| || ||||||||||| Sbjct 3526611 GCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3526670 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || | ||| || || | | |||| | |||||||||||| || || Sbjct 3526671 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 3526730 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| ||| | | || | ||||| | | ||||| Sbjct 3526731 GATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCAC 3526790 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||| || || || ||||||||||||||| Sbjct 3526791 TTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3526839 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||||| ||| | | |||||||| || ||||||||||| Sbjct 3526839 GCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3526898 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || | ||| || || | | |||| | |||||||||||| || || Sbjct 3526899 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 3526958 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| ||| | | || | ||||| | | ||||| Sbjct 3526959 GATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCAC 3527018 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||| || || || ||||||||||||||| Sbjct 3527019 TTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3527067 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | |||| ||| | | |||||||| || ||||||||||| Sbjct 3526383 GCCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3526442 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || | ||| || || | | |||| | |||||||||||| || || Sbjct 3526443 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 3526502 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| ||| | | || | ||||| | | ||||| Sbjct 3526503 GATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCAC 3526562 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||| || || || ||||||||||||||| Sbjct 3526563 TTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3526611 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | |||| ||| | | |||||||| || ||||||||||| Sbjct 3527523 GCCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3527582 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || | ||| || || | | |||| | |||||||||||| || || Sbjct 3527583 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 3527642 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| ||| | | || | ||||| | | ||||| Sbjct 3527643 GATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCAC 3527702 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||| || || || ||||||||||||||| Sbjct 3527703 TTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3527751 >seq1196 Length=1288689 Score = 111 bits (122), Expect = 2e-19 Identities = 175/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | | || || || | | | |||||||||||||| |||||||| | Sbjct 730176 CCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGAC 730235 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || |||||||| || | |||| || ||||| ||||||||||| Sbjct 730236 AATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGGG 730295 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| |||| | ||| | | ||| | |||||| | | ||||| Sbjct 730296 ATACCTTCCTTATC-TTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCAC 730354 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT----GGCTTATA 138622 ||| | || | || || || || || |||||||| || |||||||| ||| | | Sbjct 730355 CTCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCATTGTGAGCTGAAA 730414 Query 138623 ATATTATT 138630 |||||||| Sbjct 730415 ATATTATT 730422 >seq2599 Length=163288 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 57301 GCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTCG 57360 ||||||| |||||| | ||| || | ||| | ||| | || | || || ||||| || Sbjct 63336 GCCTCGATGTTGCCAAGGTCTCCAATGTGTCTCACTGTAGCATCTGGTGCTCCGTGGTCA 63395 Query 57361 --CTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGA 57418 || | || ||||| ||||| | |||||||| ||||||||||| || |||| |||| Sbjct 63396 TTCTTCAGG--GGGTTGAAGTGAGCCCCCGCCGAGGTGCAGCCGTTTGTGTTGTCCCCGA 63453 Query 57419 ACTCGTGAACGTGAAATCCGTGCAGGCCC 57447 ||||||| ||||| || |||||| |||| Sbjct 63454 ACTCGTGCACGTGGAAACCGTGCTTGCCC 63482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496217109852720