Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1527 228 9e-55 seq1435 156 5e-33 seq1207 120 3e-22 >seq1527 Length=671880 Score = 228 bits (252), Expect = 9e-55 Identities = 651/988 (66%), Gaps = 37/988 (4%) Strand=Plus/Minus Query 98734 AAAGTTACGGGGGCTTATTTTGTAGAATGGGGTGTTTA--CGATCGCAAATTTCCAGCAG 98791 ||||| ||| || ||||| || || |||||||| || ||| | || || |||| | Sbjct 504621 AAAGTGGTGGGCGCATATTTCGTCGAGTGGGGTGTATATCCGA--GGAAGTTCCCAGTTG 504564 Query 98792 ATAAAGTGCCTATCCCCAATTTGACACACCTTTTGTATGGTTTTATCCCCATTTGCGGAG 98851 | ||||| ||||| |||||||| || | |||| || || ||||| ||||| |||| Sbjct 504563 ACCGTGTGCCAATCCCGAATTTGACCCATTTGCTGTACGGATTCATCCCAATTTGTGGAG 504504 Query 98852 GCGACGGTATAAACGACAGTCTAAAACAAGTGCCGGGATCTTTTGAGACGTTACAAAAAT 98911 | || || || ||||||||| | ||| || | || ||| | | || ||| || Sbjct 504503 GTGATGGGATCAACGACAGTTTGAAAGAAATCGAAGGCAGTTTCCAAGCTTTGCAACGAT 504444 Query 98912 CGTGCGATAAGAGAGATGATTTCAAGGTGAGCATCCACGATATTTACGGTGCTCTACAGA 98971 ||||| | | || || |||||||| || ||||| | | ||||| |||| Sbjct 504443 CGTGCAGTGGCCGGGAAGACTTCAAGGTTTCGATTCACGACCCGTGGGCCGCTCTCCAGA 504384 Query 98972 AACCACAACAGGG--TGTCTCCGATTATAACGAGCCTTACCGTGGCAATTTCGGACAGCT 99029 | ||||| |||| ||||| | | ||||| |||||| ||||| || |||||| | Sbjct 504383 AGCCACAGAAGGGATTGTCTTCA--TGGAACGAACCTTACAAAGGCAACTTTGGACAGTT 504326 Query 99030 TATGGCCATACGTAAACAC----AACCC-ACATCTAAAAATCCTACCCAGTATCGGTGGT 99084 ||| || ||||| ||||| |||| |||||| | || |||||||| Sbjct 504325 GATG---ATGTTGAAACAAGCTAAACCCGACATG--AAAATCTTGCCTTCCATCGGTGGG 504271 Query 99085 TGGACTCTTAGC-GACCCCTTCTATTTTTTCGCCGATGATTACAAGCGCAAAGTGTTCGT 99143 |||||| || || || ||||||| || ||| | || | | ||| | | || || Sbjct 504270 TGGACT-TTGGCTGATCCCTTCTTCTTCTTCACTGACAAGTCTAAGAGAGACCGATTTGT 504212 Query 99144 AGACTCGGTTCGTGAATTCCTACAGGTGTGGAAATTTTTCGACGGTGTAGACATCGACTG 99203 || || || || ||||| || ||||| || ||||||||||| ||||||||||| Sbjct 504211 AGCTTCAGTGAAGGACTTCCTCGAGACCTGGAAGTTCTTCGACGGTGTTGACATCGACTG 504152 Query 99204 GGAGTTTCCTGGCGGAAAGGGGGCCAACCCTGAAGTAGGAAATCCTAATGAGGACGGAAA 99263 |||||| |||||||| || || ||||||||| | | || | ||| | |||| || | Sbjct 504151 GGAGTTCCCTGGCGGCAAAGGTGCCAACCCTAACCTTGGCAGTCCCA---AGGATGGTGA 504095 Query 99264 CACTTATGTCACACTTCTGCAAGAGCTTCGTTTGATGCTTGACGAATTG---GGTG---- 99316 || || | ||| || |||| |||||| ||| | | || || | || Sbjct 504094 TGTATACGTGTCGCTTATGAAAGAACTTCGTGAAATGTTGAATGAGCTGTCAGCTGAAAC 504035 Query 99317 TGGCCAATAAACGTGTTTACGAACTGACAAGTGCCGTGGGCGCCGGTTACGATAAAATCG 99376 ||| || ||| || || ||||| ||| | ||||||||| || |||||| Sbjct 504034 TGG-AAAGAAA------TATGAGCTGACTTCAGCCATCAGCGCCGGTTGGGACAAAATCC 503982 Query 99377 ACGTGGTCGATTACTCTACAGCCAGTCAATATTTGGACCATGTGTTTTTAATGAGTTACG 99436 | ||||| | ||| |||| |||| |||| || | || || |||||||| | Sbjct 503981 AAGTGGTGAACTACAAAGAAGCCCAGAAATACATGGATCACATTTTCTTCATGAGTTATG 503922 Query 99437 ATTTTAAAGGCGCCTGGTCCAACACCGACTTGGGTCATCAAACACCATTGTATGCACCAT 99496 | || ||||| |||||||| ||| | ||||| || || ||| || |||| || || Sbjct 503921 ACTTCAAAGGAGCCTGGTCGAACGACACTTTGGGCCACCAGACATCACTGTACGCGCCTG 503862 Query 99497 CGTGGAACTCCGAAGAGAGATACACAACCGATTATGCGGTTAAACAGCTATTAAAGAAAA 99556 ||||||| | | |||| ||||| || |||| | |||||| | || ||| | Sbjct 503861 CGTGGAAACCAAAGGAGACTTACACGACAGATTTCGGAGTTAAATACCTGTTAGCTCAGG 503802 Query 99557 AAGTGCCTTCTCACAAGATTGTAGTGGGAGTCGCCATGTACGGCAGAGGATGGAGTGGAG 99616 ||| | | ||||| |||| || || || ||||||||| | || |||| |||| Sbjct 503801 GCGTGAACCCGAAGAAGATAATAGTCGGCGTAGCTATGTACGGCCGTGGTTGGACAGGAG 503742 Query 99617 TGCATGACTACAAAAATAATAACGTTTTTACGGGTGTGGCCACGGGACCGGTAAAAGGCA 99676 | || |||||| | | || || ||||| ||| ||||| || || ||||| Sbjct 503741 TTCAGAACTACACAGACAACAATCCATTTACTGGTAATGCCACAGGTCCCTGCAAAGGTT 503682 Query 99677 CCTGGGAAAACGGTGTTGTTGATTATAG 99704 | ||| || | ||||| ||||||||||| Sbjct 503681 CTTGGCAAGATGGTGTCGTTGATTATAG 503654 >seq1435 Length=863250 Score = 156 bits (172), Expect = 5e-33 Identities = 327/481 (68%), Gaps = 10/481 (2%) Strand=Plus/Minus Query 14413 AGTTTCAGCAAATTTAAATCTACCATGGAGTGTCCATTGTTTTTGCTCGGCAACAACGAG 14472 ||||||| ||||||||| | | |||||||| || ||||||||||| | || ||| Sbjct 803153 AGTTTCAATAAATTTAAAAATTCTATGGAGTGCCCGTTGTTTTTGCTGAACGACCCCGA- 803095 Query 14473 CTGTCAC--AGTCTATTGGTTACTATTACAATCTAAACGCGTTTAAACAGCTGCTGGACC 14530 | ||| |||| || ||||| | ||| | | || | | ||| | || || | Sbjct 803094 -TATCAGCGAGTCGATAGGTTATTTTTATACATTGAATGTTTATAAGGAATTGTTGAAGA 803036 Query 14531 ATCATAATTTTACGGAGCCTCGCACACGCAAACCTTTTTGCGGAGGACTGGTGTTGACAG 14590 | ||| | || || ||||| | || | ||| || || || || || | || Sbjct 803035 AAGATACTAAGACAGAACCTCGGAATCGGAGACCATTCCATGGTGGTCTAGTCATTGTAG 802976 Query 14591 ACACCGATAGATTCGATGCATACAACGATTACGTGATATCAGCCACGTACTTTGACGGAA 14650 | || ||| ||| || ||| |||||||| | ||||| || ||||||||| | | Sbjct 802975 ATACAGATGAATTTGACAGATATAACGATTATATAATATCGGCAACGTACTTTAATTTCA 802916 Query 14651 AAAAGGTAAATTACAATAGTGGTTTATTTTATTATGTACTCTGGAA--ATTGTGTAGTGA 14708 ||||| |||| ||||||| ||||||||| |||||| |||| ||||| |||||| | | Sbjct 802915 AAAAGATAAAATACAATATTGGTTTATTCTATTATATACTATGGAAGAATTGTGA--TAA 802858 Query 14709 CAAAGAGTGGATGGATAAGAATGTACTTGATCAGTTTTTGAAATACGTCAAGCGTCGCAT 14768 ||||| |||||||||| ||||| |||| || ||| ||| ||||| | | | || || Sbjct 802857 TAAAGAATGGATGGATAGAAATGTTGTTGAGCATTTTAAGAAGTACGTAATGAGACGTAT 802798 Query 14769 C-GAGACTACCACGTGCAAGCTTAGTCTTTCTTCGCTTCCCATGGACCCACAAATGAATA 14827 | || ||| || ||| || |||| || | | || | ||||| ||| ||| | Sbjct 802797 TAGTGA-TACAGTATGTAAGATTGGTCTCTCAGCTTTGCCGTTAGACCCCCAAGAGAACA 802739 Query 14828 CGTCACTATTGACCGCTCTGTGGTATTGTGTCGACTTGTCATCTGAAATATTCAAAAATG 14887 ||||| | | || || ||||||| || || |||||||||||| |||| ||| ||| Sbjct 802738 CGTCATTGCTTACTGCGTTGTGGTACTGCGTTGACTTGTCATCTAGCTTATTTAAAGATG 802679 Query 14888 A 14888 | Sbjct 802678 A 802678 >seq1207 Length=6027761 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || |||| ||||| || | || ||||||||||||||| ||||| | Sbjct 3525698 TGCCACCACGCAAGCGCAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTATAGTCTG 3525757 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || | ||||||||| ||||| ||||| ||||||||||| | | Sbjct 3525758 AGAGAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGG 3525817 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGC-GTCGCCACCGTGTCGCTCGATTCC 46543 | | | ||| |||||| ||| || ||| | | || | | ||||| | |||| Sbjct 3525818 GAATTCCCTCTTTGTCC-TGAATTTTAGCTTTAACATTCTCGATGGTGTCAGAAGGTTCC 3525876 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||||||||| || || || || |||||||| || ||||| Sbjct 3525877 ACTTCAAGTGTGATGGTTTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3525926 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| ||||| || || | ||| | ||| ||||||||| || ||||||||||| Sbjct 2997797 CCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAA 2997856 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || | ||||||||| ||||| ||||| ||||||||||| | || Sbjct 2997857 AGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGA 2997916 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| || || ||| | | | | ||||| | || || Sbjct 2997917 ATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACT 2997976 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||| || |||| || || || || |||||||| Sbjct 2997977 TCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || ||||||||||| || ||||| || |||||||| | Sbjct 3526167 ACGCAACACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAGTCTGAGAGAGTGCGACC 3526226 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | |||||| ||||| || ||||| ||||||||||| | || | | ||| || Sbjct 3526227 ATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTT 3526286 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| |||| || | | ||||| | || || || | ||||| Sbjct 3526287 ATCCTGAATCTTAGCTTTGACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGTGTGAT 3526346 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || |||||||| ||||| ||||| Sbjct 3526347 AGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCAT 3526382 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| ||||| |||||||| || | ||||| | || || Sbjct 3527770 ACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCC 3527829 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||||| || || ||||| ||||||||||| | || | | ||| |||||| || Sbjct 3527830 AATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCC-TG 3527888 Query 46505 ATCTTCTTC-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 | || | | |||| || | | ||||| | ||||| || | ||||||||||| Sbjct 3527889 AATTTTTGCTTTGACATTCTCAATGGTGTCTGAAGGCTCCACTTCAAGTGTGATGGTTTT 3527948 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| || ||||| ||||| Sbjct 3527949 CCCAGTGAGAGTTTTTACGAAGATCTGCAT 3527978 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| || | || |||||||| ||||||||||||| Sbjct 3527978 TGCCACCACGGAGACGCAGCACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGG 3528037 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| |||| || | ||| || || ||||| |||| ||||||||| || | || Sbjct 3528038 AGAGGGTGCGACCGTCTTCCAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCG 3528097 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || ||||| ||| || || | | | | || || | ||| | Sbjct 3528098 GAATGCCTTCTTTGTCTTGGATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAA 3528157 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| || |||||||| || |||| || ||||| || || ||||||||| Sbjct 3528158 CTTCCAATGTAATGGTTTTACCAGTCAAGGTCTTAACGAAAATCTGCATTTTG 3528210 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| |||||||| ||||| || ||||| | || || | ||||||||| ||||| Sbjct 2996267 TCCTTTTGAATATTGTAATCGGAAAGCGTGCGTCCATCTTCCAACTGCTTGCCTGCGAAG 2996326 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | || |||||||| || || ||| | | Sbjct 2996327 ATCAATCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTT 2996386 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || || | ||||||||||| || |||| || || || Sbjct 2996387 TCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACG 2996446 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 2996447 AAAATTTGCAT 2996457 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || ||||| ||||| || ||||| || |||||||| | Sbjct 3527307 ACGCAACACCAAGTGAAGAGTCGATTCCTTCTGGATGTTATAGTCTGAGAGAGTGCGACC 3527366 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | |||||| ||||| || ||||| ||||||||||| | || | | ||| || Sbjct 3527367 ATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTT 3527426 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| |||| | | | ||||| | || || || | ||||| Sbjct 3527427 ATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGAAGGCTCAACTTCAAGTGTGAT 3527486 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || |||||||| ||||| ||||| Sbjct 3527487 AGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCAT 3527522 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| ||||| |||||||| || | ||||| | || || Sbjct 3527086 ACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCC 3527145 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||||| || || ||||| ||||||||||| | || | | ||| |||||| || Sbjct 3527146 AATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCC-TG 3527204 Query 46505 ATCTTCTTCTTGAGC-GTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 | || ||| | | | | | ||||| | ||| || || | ||||||||||| Sbjct 3527205 AATTTTAGCTTTAACATTTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGGTTTT 3527264 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| || || || ||||| Sbjct 3527265 TCCAGTGAGAGTTTTGACGAATATCTGCAT 3527294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565186814930520