Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1527 187 2e-42 seq1207 109 4e-19 seq1196 86.0 4e-12 >seq1527 Length=671880 Score = 187 bits (206), Expect = 2e-42 Identities = 791/1234 (64%), Gaps = 34/1234 (3%) Strand=Plus/Plus Query 5832 TTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCACGCAAATAAACCACCC 5891 ||||||||||| | | ||| || |||||||| ||||||||||| || |||| |||||| Sbjct 503435 TTCATTGCATTGAGTATATCGCCATTGTCCGCATCTATTTCCCAAGCGAATAGACCACCT 503494 Query 5892 AAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGATCGTTGTCGTACGTA 5951 || || || || |||||||| || || | | || ||| | | ||||| || Sbjct 503495 AACTTATTACTTCTCACATACTTCCCCTTCTCAATGACTGATCTGGCATCATCGTAAGTT 503554 Query 5952 ACTAAATCATTATTATC------GTAGACGTACGGAGATTGTGCAATGTTATCATAGAAT 6005 | || || | | | | | ||||| || | ||| || | ||| || || || Sbjct 503555 ATCAAGTCTCCAGTCGCTGGTCTGAAAACGTAAGGCGCTTGGGCGACGTTGTCGTA--AT 503612 Query 6006 TGTACAC----TTTCGTCG---TACCT-ATTTACAATATCTTTATAATCGATTACGCCGC 6057 |||| | || | | | || || |||| |||| ||| ||||||| | || || Sbjct 503613 GGTACTCCCATTTGCCTTGAGCTATCTCATTTGCAATGTCTCTATAATCAACGACACCAT 503672 Query 6058 TTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACGGATTATTGTTTTCGA 6117 || ||| | |||||| |||| | | || | || ||||| ||||| |||| | | Sbjct 503673 CTTGCCAAGAACCTTTGCAGGGACCTGTGGCATTACCAGTAAATGGATTGTTGTCTGTGT 503732 Query 6118 CTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTACTACTAATTTAGTCG 6177 || || || |||| || || || |||||||| || || |||| || || ||| Sbjct 503733 AGTTCTGAACTCCTGTCCAACCACGGCCGTACATAGCTACGCCGACTATTATCTTCTTCG 503792 Query 6178 AATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGTTGTGTAATTTTCGTTAA 6237 | || ||| ||||| |||| | |||| || |||||| | || || Sbjct 503793 GGTTCACGCCCTGAGCTAACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTCTCCTTTG 503852 Query 6238 CGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTTTCCATGGACCAAGCGC 6297 | ||||| ||| ||||| || | ||| || |||||| | || | ||||| || | Sbjct 503853 GTTTCCACGCAGGCGCGTACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGACCAGGCTC 503912 Query 6298 CTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGTTGCGCGTCTGTATAAT 6357 |||| || || || |||| | || || | ||| | || || || ||| | || | Sbjct 503913 CTTTGAAGTCATAACTCATGAAGAAAATGTGATCCATGTATTTCTGGGCTTCTTTGTAGT 503972 Query 6358 CGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTTAGTTGCAATCGTTTAC 6417 || || | ||||||||| ||||||| | ||| || ||| || | || || | Sbjct 503973 TCACCACTTGGATTTTGTCCCAACCGGCGCTGATGGCTGAAGTCAGCTCATATTTCTTTC 504032 Query 6418 CTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTTTAAAAGTATTGTATATG 6477 | | | | || | || | |||||| || | || || | ||| ||| Sbjct 504033 CAGTTTCAGCTGACAGCTCATTCAACATTTCACGAAGTTCTTTCATAAGCGACACGTATA 504092 Query 6478 TTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACCTTTACCGCCCGGAAACT 6537 | | |||| | | |||| || |||||||||||||| ||||| || |||| Sbjct 504093 CATCACCATCCTTGGGAC---TGCCAAGGTTAGGGTTGGCACCTTTGCCGCCAGGGAACT 504149 Query 6538 CCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAAAAATTCGCGCACACTAT 6597 |||| || ||||| || |||||||| || ||||| || || | || || ||| | Sbjct 504150 CCCAGTCGATGTCAACACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTCCTTCACTGAAG 504209 Query 6598 CAACAAACGTATTTCGTTTTTCGAC--GTCGTTTAACTGGTAAAACGGATC-GCTAAGCG 6654 | ||||| | || | || ||| ||| | || | | || ||||| || || | Sbjct 504210 CTACAAATCGGTCTC--TCTTAGACTTGTCAGTGAAGAAGAAGAAGGGATCAGCCAAA-G 504266 Query 6655 TCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGGCGCTTGATCGCCATTA 6714 |||| || || || || ||||| ||| | | || || || | || | | ||| | Sbjct 504267 TCCACCCACCGATGGAAGGCAAGATTTTCATGTCGGGTTTAGCTTGTTTCAACATCATCA 504326 Query 6715 ACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCGACA--CCTTTTTGTGGTTT 6772 ||||||||||||| |||||||| |||||||| | | |||| || || ||||| || Sbjct 504327 ACTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCATGAA--GACAATCCCTTCTGTGGCTT 504384 Query 6773 TTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCTTTTCGGCCGGCGCACGA 6832 || || || |||| || ||||| | || ||||| |||| ||||| |||||| Sbjct 504385 CTGGAGAGCGGCCCACGGGTCGTGAATCGAAACCTTGAAGTCTTCCCGGCCACTGCACGA 504444 Query 6833 TTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTTTAAGCGCATCGTTTACACCAT 6891 | |||||| || | |||| || | |||| || | || | ||||| | |||| Sbjct 504445 TCGTTGCAAAGCTTGGAAACTGCCTTCG-ATTTCTT--TCAAACTG-TCGTTGATCCCAT 504500 Query 6892 CGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAGATTAGGAATGGGAATTT 6951 | || ||||||||||| || || ||||||| |||||| || | ||| || || || | Sbjct 504501 CACCTCCACAAATTGGGATGAATCCGTACAGCAAATGGGTCAAATTCGGGATTGGCACAC 504560 Query 6952 TGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAAGTAAGCGCCCACAACAT 7011 ||| | || | | || || |||||||| || || || || |||||||| || | Sbjct 504561 GGTCAACTGGGAACTTCCTCGGATATACACCCCACTCGACGAAATATGCGCCCACCACTT 504620 Query 7012 TATCGGTAATTTTTTCGAACGGTACATTGTTTTC 7045 || ||| | | | ||||||| ||| |||| Sbjct 504621 TACCGGACGTCTGCTTGAACGGTTTATTTCTTTC 504654 >seq1207 Length=6027761 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| |||||||| ||||| ||| |||||||||||| || ||||| | Sbjct 3525244 CCACCACGAAGACGGAGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAG 3525303 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| | || ||||||||||| || | || || | |||||| || || | || Sbjct 3525304 AGGGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGG 3525363 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| ||||| ||||| | | | |||||| | || || Sbjct 3525364 ATACCCTCCTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACT 3525423 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| || |||||||| ||||||||||| || || ||||||||| Sbjct 3525424 TCTAAAGTTATAGTTTTACCAGTTAAAGTTTTCACAAATATCTGCATG 3525471 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | ||| | ||| || || || || || || || | Sbjct 3527751 GCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3527810 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| |||||||| || || |||| || ||||||||||| || | ||| Sbjct 3527811 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 3527870 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| |||||| ||| | || | | ||||||| ||||| Sbjct 3527871 AATTCCCTCTTTGTCCTGAATTTTTGCTTTGACATTCTCAATGGTGTCTGAAGGCTCCAC 3527930 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || ||||| || || | |||||||||||||||||||||| Sbjct 3527931 TTCAAGTGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATG 3527979 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | |||||| ||||| || | || ||| ||||| ||||| || |||| Sbjct 3527979 GCCACCACGGAGACGCAGCACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGA 3528038 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | ||| | || ||||| ||||| || | || || | ||||||||||| | || Sbjct 3528039 GAGGGTGCGACCGTCTTCCAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGG 3528098 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| ||||| ||| | | | | ||| || | | ||| || Sbjct 3528099 AATGCCTTCTTTGTCTTGGATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAAC 3528158 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| |||||||| || || || || ||||| |||||||| Sbjct 3528159 TTCCAATGTAATGGTTTTACCAGTCAAGGTCTTAACGAAAATCTGCAT 3528206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||||||||| || | ||| ||| ||||| ||||| ||||||| Sbjct 2996231 CCACCACGAAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCGG-- 2996288 Query 39553 AAAAC--GCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | |||| |||| ||||| || || || | || || || |||||||| || | | Sbjct 2996289 AAAGCGTGCGTCCATCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGAG 2996348 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTC 39668 | | |||||| ||||| ||||| ||| || ||| || ||||||| || Sbjct 2996349 GAATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATA--GTGTCTGATGGCTC 2996406 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || ||||| || || || || || ||||| || ||||| Sbjct 2996407 TACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2996457 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | ||| | ||| || || || || ||||| || | Sbjct 3525927 GCCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGA 3525986 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| |||||||| || || |||| || ||||||||||| || | ||| Sbjct 3525987 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 3526046 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| ||||| ||| | | ||| |||||| | ||| || Sbjct 3526047 AATTCCCTCTTTGTCCTGAATTTTAGCTTTGACATTTTCTATTGTGTCAGATGGTTCTAC 3526106 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| || || | |||||| ||||| |||||||| Sbjct 3526107 TTCTAGTGTGATGGTTTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3526154 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | ||| | ||| || || || || || || || | Sbjct 3527067 GCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3527126 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| |||||||| || || |||| || ||||||||||| || | ||| Sbjct 3527127 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 3527186 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| ||||| ||||| | ||| |||||| | ||| || Sbjct 3527187 AATTCCCTCTTTGTCCTGAATTTTAGCTTTAACATTTTCTATTGTGTCAGATGGTTCTAC 3527246 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| || || | |||||| ||||| |||||||| Sbjct 3527247 TTCTAGTGTGATGGTTTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3527294 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || ||||| ||||| ||||| || | || || ||||| |||||||| || | Sbjct 3525699 GCCACCACGCAAGCGCAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTATAGTCTGA 3525758 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | ||| |||| ||||| || || || | || || ||||||||||| || | ||| Sbjct 3525759 GAGAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 3525818 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| ||||| ||||| || | | ||||| | |||||| Sbjct 3525819 AATTCCCTCTTTGTCCTGAATTTTAGCTTTAACATTCTCGATGGTGTCAGAAGGTTCCAC 3525878 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || ||||| || || | || || || || ||||||||| Sbjct 3525879 TTCAAGTGTGATGGTTTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3525927 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||||| ||||| || | || ||| ||||| || ||||| || | Sbjct 3526156 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAGTCTGAG 3526215 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| ||||| || || ||| |||| || ||||||||||| || | ||| Sbjct 3526216 AGAGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 3526275 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || ||||| || || || ||| | || | | ||||| | || || Sbjct 3526276 ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTCTCAATGGTGTCAGAAGGCTCAACT 3526335 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || ||||| || || | |||||| ||||||||||||||| Sbjct 3526336 TCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCATG 3526383 >seq1196 Length=1288689 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| ||||| ||| || ||||| ||||| || || | | Sbjct 730176 CCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGAC 730235 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| |||| |||||| || | || || | |||||||| |||| || Sbjct 730236 AATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGGG 730295 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || ||||| ||| | | | | ||||| | |||||| Sbjct 730296 ATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCACC 730355 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || || ||||| | |||||||||||||||||||| Sbjct 730356 TCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCAT 730402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347338690727333