Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1251 493 1e-134 seq1346 118 1e-21 seq1353 89.7 6e-13 >seq1251 Length=5235866 Score = 493 bits (546), Expect = 1e-134 Identities = 1170/1770 (66%), Gaps = 34/1770 (2%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || ||||| ||||| | ||| | ||| || | |||||||||| ||||||||| ||| Sbjct 3096376 TTATCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTTGTTCGTAGATAATACATTCCA 3096317 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || || | ||| | |||| |||| || || ||| ||||| ||| |||| | || Sbjct 3096316 GTTTTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTGGC 3096257 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 || | | ||| ||||||| || || || ||||| || ||||||||||| || || ||| Sbjct 3096256 TCAGCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCGCC 3096197 Query 47154 ATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211 || | | || |||| || |||||||| || ||||| || | | | | || | Sbjct 3096196 ATTTGAATGGTAGT--TTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTTATAT 3096139 Query 47212 CTTCTGGGA---GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 ||| ||||| | || | |||||||||| ||||| || | ||||| ||||| Sbjct 3096138 CTT-TGGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGAATAATGAGATTTTTC 3096080 Query 47268 aattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATT 47327 | || | ||| || | ||| ||||| || | ||| |||| |||| | Sbjct 3096079 ATATCTTCATCCCATAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACAACT 3096020 Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTAT---ATATATTACTTGTATATGGTTCTATA 47384 || |||||||| |||| ||| ||| || | | |||||| ||| | || || | | Sbjct 3096019 TGGAATTCTCCTGATAATAC---ACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAA 3095963 Query 47385 GATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG 47444 |||||||| ||||||| ||||| || ||||| || |||||||| | || |||| || Sbjct 3095962 GATTCATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGT 3095903 Query 47445 CTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCT 47504 ||| | | ||||| |||| || | | ||| ||||| || ||| Sbjct 3095902 GAATTGCGAAGTCCATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCCAGAGGTCT 3095843 Query 47505 GATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTA 47564 | |||| ||||| | |||||||| | || || | ||| | ||| ||||| | Sbjct 3095842 GTTGGAGTTTTGTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACTACCATGA 3095783 Query 47565 TATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAA 47624 ||||| | ||| || ||| || || | |||||||||||| || || || | ||| Sbjct 3095782 TATGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAA 3095723 Query 47625 TATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATAN 47684 || || ||||||||||||| | ||| || || | || | |||| | || Sbjct 3095722 TAAATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTCACTTTCATATGGTATG 3095663 Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTT 47744 ||||||||||| |||||||| ||||| || ||||| ||||| || | Sbjct 3095662 CGCATTAATACAAATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCTGTGCCTC 3095603 Query 47745 TTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA 47804 |||| || | ||||| || | |||||| | || | ||| ||||||||||||||| Sbjct 3095602 ATATTTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATAATTTTATTTAGA 3095543 Query 47805 NNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAAC---TTGTTATTT 47861 | ||| | | ||| |||| | | |||| || Sbjct 3095542 TTCTGGGTAACTATCTTTGTGACCTCTTTAAGTTTGGTAAAGTTGTAAGTTTTGTCATCA 3095483 Query 47862 ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTA 47921 | |||||| | || | || |||||||||| ||||| || ||| |||| || | Sbjct 3095482 TTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGTTTCATCTGCAGAT 3095423 Query 47922 GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981 ||||| | | ||||| | || | || | |||||| || || || | ||||| ||| Sbjct 3095422 GTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCCTAGATTTTTCTGA 3095363 Query 47982 TTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGA 48041 ||| | | ||||| || |||||||| | |||| | |||||||||||||||| || Sbjct 3095362 TTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCCAGTTTCTACTTGT 3095303 Query 48042 GATTCAATGATAGATTTCCAAA----CAGTCCTA-GCCTT-TATAACAGCTCTAGCTTTA 48095 | |||||| |||| |||||| | | || || | ||| | | ||| || | || Sbjct 3095302 GCTTCAATAATAGCTTTCCACAGTATCTGTGCTTTGACTTGTTTCACA----TAACGTTT 3095247 Query 48096 TTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAAC 48155 || | ||||| ||||| ||| || |||||| || || || | || |||| Sbjct 3095246 TT--CCTGTTCATATTTTTCATACAAAGCCTCAAACTCTTCACCCCAGCAATCGGCTAAA 3095189 Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 || ||| | |||| ||| ||||| | |||||| |||| |||| || | ||||| Sbjct 3095188 CCTGGAGAATCATGAGGGCACATAATACTCCAATCTTCATTTTTTTCAACACGTTTCATA 3095129 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 |||| |||||| ||||| || || ||| | || || | | || ||| || || ||| Sbjct 3095128 AATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTACTTCCTCTTTACCA 3095069 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 |||| |||| | || ||||| || | ||||||||||||||| ||||||||||| | | Sbjct 3095068 TGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGGGTTCTAAATACACT 3095009 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | | || || |||||||| || ||||| || | |||||||||||| || || ||| Sbjct 3095008 GCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGGCAGTGTTATTGTAA 3094949 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || | ||||| || || ||||||||||| | |||||| ||||| | ||| || | || Sbjct 3094948 ACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAGCAATGTAGGTGCCT 3094889 Query 48456 CTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 | ||||| || | | | || || ||| |||||||| || |||||| || | || Sbjct 3094888 TTGGCTCTAATGCAGTGCACAT--GAACACCAATACCACCAGCTGATTTAGAGATCAAAG 3094831 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573 ||||| |||| | || ||||| || || || || || |||||| ||||| | |||| Sbjct 3094830 CACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCATAGCAACAAGAA 3094771 Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633 |||| ||||| || || | || | | | ||| | |||||| |||||| Sbjct 3094770 AACATGAAGACAACTGTGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTGGACTCGCATGAG 3094711 Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGAT 48693 | || ||||||| ||||| || || ||||| | ||| | | ||| | ||| || Sbjct 3094710 TGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAACATCTTCACCAT 3094651 Query 48694 GTATACCTATAGATACACGCATTAACATAT 48723 |||| || ||||| || | ||||||||||| Sbjct 3094650 GTATTCCGATAGAAACTCTCATTAACATAT 3094621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 48927 TTTTTTGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCT 48986 ||||| |||||||| || | || || |||| | |||||| ||||| ||||||||||| Sbjct 3092259 TTTTTGGTTTCTTTGTGCAAGTTTGAGATAGCCAGTCTAGCTGCTAAAATAGCATAATCC 3092200 Query 48987 GGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTA 49046 |||||| ||||| |||| | | |||| || ||||| |||| | |||| ||| Sbjct 3092199 GGATGATCAGTTGTCATTGTAGCTGCTGTTTCAGCAGCTAAATTATCCAGTTCTACAGTG 3092140 Query 49047 GTTACACCTGTATATATTCCTTGAATAACTTTCA 49080 || || |||| || ||||| || ||||||| Sbjct 3092139 GTCACCCCTGAGTAGATTCCACTTATCACTTTCA 3092106 >seq1346 Length=947742 Score = 118 bits (130), Expect = 1e-21 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292 ||||| || || | ||| |||||| || ||||| | |||||| ||||| ||||| || Sbjct 446261 ATATGTGTCAATAAGTAAGGAGTACATCTCAGAATGTACATTTTCCATAGCAATCTGGAA 446320 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 || |||||| |||| |||||||| | || || || | |||||||| || | || Sbjct 446321 CCCATAAAAAAATCTAGCTTCTGTCACTTGGACCTCTTGTGAGAATCTTTCTACTAGGTT 446380 Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGT 19410 |||||| ||||||||||| ||||| |||||||| | |||||||| || |||||| Sbjct 446381 TTCATTGACTATTCCATCTGACGCTGCGAAAAATGCAAGCACATGTTTGATGAAATGT 446438 Score = 109 bits (120), Expect = 6e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||| |||| |||||| || || | |||||||| || || || || | Sbjct 445068 CCTCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTTCT 445127 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || ||||| || || || ||||| || ||||| ||||||||||||| Sbjct 445128 TCAGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAG 445187 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | || | || ||||||| | | ||| || | ||||| | || |||||| || | Sbjct 445188 CCACAATTCGTTCTCCAAATGTGGCAGTCTTGCTGGCGATCCACTGCAATGCCCAGTCGG 445247 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 ||||||| || || || |||| ||||| || | ||| || || Sbjct 445248 CCTTCTTCTTCACGCAGGGCAGGGTCTCAATGGCATTGAACAG 445290 >seq1353 Length=2130601 Score = 89.7 bits (98), Expect = 6e-13 Identities = 237/360 (66%), Gaps = 9/360 (3%) Strand=Plus/Minus Query 136634 ATGACTCCTATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAA 136693 ||||||||| | || |||||||| ||| |||| |||||||||| | || | ||| Sbjct 1736938 ATGACTCCTGTGCGGCCTATGTTGGCTGAAGCATGCAAATCTGTAGAAATGGCTATGAAA 1736879 Query 136694 AAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCAC 136753 || | ||| || || || | | | ||||| ||||||||||||||| | ||||| || || Sbjct 1736878 AAATGTCCCAACGGTATGTATTCTGAAATCAAATATGACGGAGAAAGAGTACAAGTGCAT 1736819 Query 136754 AAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATAAA 136813 || || || | ||||| || ||| | | ||||||| || | |||||| Sbjct 1736818 AAAAAAGGTGATGACTTTCGATATTTCTCACGTGCCTTGAAACCAGTTATGCCTCATAAA 1736759 Query 136814 GTTGATTATCTTAATGAGTATATACCTAAAGCCTT---TAAAAATGTATCATCTCTTATT 136870 ||| | || || || ||| |||| || || || | || ||| | | || Sbjct 1736758 GTTAGTCATTTTCGGGATTATTTACCAAAGGCGTTCCCTGAAGCTGT---GGATTTGATA 1736702 Query 136871 TTAGATTCAGAAATAGTACTAGTAGAT---AAAAATAATAAACCATTACCATTTGGCAGT 136927 |||||| | ||| || | | | ||| || | | |||||| || |||||||| | Sbjct 1736701 TTAGATGCGGAAGTATTGATGATTGATGTGAACACTGGTAAACCTTTGCCATTTGGTACA 1736642 Query 136928 TTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGAT 136987 | ||| ||||||| | |||| || ||| | | |||| || |||||||||||| Sbjct 1736641 CTAGGTGTACATAAGCAATCAGAATTCAAAGATGCGCAAGTATGCTTGTTTGTATTTGAT 1736582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562057500545640