Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1251 493 1e-134
seq1346 118 1e-21
seq1353 89.7 6e-13
>seq1251
Length=5235866
Score = 493 bits (546), Expect = 1e-134
Identities = 1170/1770 (66%), Gaps = 34/1770 (2%)
Strand=Plus/Minus
Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033
|| ||||| ||||| | ||| | ||| || | |||||||||| ||||||||| |||
Sbjct 3096376 TTATCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTTGTTCGTAGATAATACATTCCA 3096317
Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093
|| || | ||| | |||| |||| || || ||| ||||| ||| |||| | ||
Sbjct 3096316 GTTTTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTGGC 3096257
Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153
|| | | ||| ||||||| || || || ||||| || ||||||||||| || || |||
Sbjct 3096256 TCAGCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCGCC 3096197
Query 47154 ATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211
|| | | || |||| || |||||||| || ||||| || | | | | || |
Sbjct 3096196 ATTTGAATGGTAGT--TTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTTATAT 3096139
Query 47212 CTTCTGGGA---GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267
||| ||||| | || | |||||||||| ||||| || | ||||| |||||
Sbjct 3096138 CTT-TGGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGAATAATGAGATTTTTC 3096080
Query 47268 aattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATT 47327
| || | ||| || | ||| ||||| || | ||| |||| |||| |
Sbjct 3096079 ATATCTTCATCCCATAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACAACT 3096020
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTAT---ATATATTACTTGTATATGGTTCTATA 47384
|| |||||||| |||| ||| ||| || | | |||||| ||| | || || | |
Sbjct 3096019 TGGAATTCTCCTGATAATAC---ACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAA 3095963
Query 47385 GATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG 47444
|||||||| ||||||| ||||| || ||||| || |||||||| | || |||| ||
Sbjct 3095962 GATTCATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGT 3095903
Query 47445 CTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCT 47504
||| | | ||||| |||| || | | ||| ||||| || |||
Sbjct 3095902 GAATTGCGAAGTCCATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCCAGAGGTCT 3095843
Query 47505 GATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTA 47564
| |||| ||||| | |||||||| | || || | ||| | ||| ||||| |
Sbjct 3095842 GTTGGAGTTTTGTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACTACCATGA 3095783
Query 47565 TATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAA 47624
||||| | ||| || ||| || || | |||||||||||| || || || | |||
Sbjct 3095782 TATGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAA 3095723
Query 47625 TATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATAN 47684
|| || ||||||||||||| | ||| || || | || | |||| | ||
Sbjct 3095722 TAAATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTCACTTTCATATGGTATG 3095663
Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTT 47744
||||||||||| |||||||| ||||| || ||||| ||||| || |
Sbjct 3095662 CGCATTAATACAAATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCTGTGCCTC 3095603
Query 47745 TTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA 47804
|||| || | ||||| || | |||||| | || | ||| |||||||||||||||
Sbjct 3095602 ATATTTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATAATTTTATTTAGA 3095543
Query 47805 NNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAAC---TTGTTATTT 47861
| ||| | | ||| |||| | | |||| ||
Sbjct 3095542 TTCTGGGTAACTATCTTTGTGACCTCTTTAAGTTTGGTAAAGTTGTAAGTTTTGTCATCA 3095483
Query 47862 ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTA 47921
| |||||| | || | || |||||||||| ||||| || ||| |||| || |
Sbjct 3095482 TTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGTTTCATCTGCAGAT 3095423
Query 47922 GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981
||||| | | ||||| | || | || | |||||| || || || | ||||| |||
Sbjct 3095422 GTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCCTAGATTTTTCTGA 3095363
Query 47982 TTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGA 48041
||| | | ||||| || |||||||| | |||| | |||||||||||||||| ||
Sbjct 3095362 TTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCCAGTTTCTACTTGT 3095303
Query 48042 GATTCAATGATAGATTTCCAAA----CAGTCCTA-GCCTT-TATAACAGCTCTAGCTTTA 48095
| |||||| |||| |||||| | | || || | ||| | | ||| || | ||
Sbjct 3095302 GCTTCAATAATAGCTTTCCACAGTATCTGTGCTTTGACTTGTTTCACA----TAACGTTT 3095247
Query 48096 TTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAAC 48155
|| | ||||| ||||| ||| || |||||| || || || | || ||||
Sbjct 3095246 TT--CCTGTTCATATTTTTCATACAAAGCCTCAAACTCTTCACCCCAGCAATCGGCTAAA 3095189
Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215
|| ||| | |||| ||| ||||| | |||||| |||| |||| || | |||||
Sbjct 3095188 CCTGGAGAATCATGAGGGCACATAATACTCCAATCTTCATTTTTTTCAACACGTTTCATA 3095129
Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275
|||| |||||| ||||| || || ||| | || || | | || ||| || || |||
Sbjct 3095128 AATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTACTTCCTCTTTACCA 3095069
Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335
|||| |||| | || ||||| || | ||||||||||||||| ||||||||||| | |
Sbjct 3095068 TGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGGGTTCTAAATACACT 3095009
Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395
|| | | || || |||||||| || ||||| || | |||||||||||| || || |||
Sbjct 3095008 GCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGGCAGTGTTATTGTAA 3094949
Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455
|| | ||||| || || ||||||||||| | |||||| ||||| | ||| || | ||
Sbjct 3094948 ACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAGCAATGTAGGTGCCT 3094889
Query 48456 CTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513
| ||||| || | | | || || ||| |||||||| || |||||| || | ||
Sbjct 3094888 TTGGCTCTAATGCAGTGCACAT--GAACACCAATACCACCAGCTGATTTAGAGATCAAAG 3094831
Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573
||||| |||| | || ||||| || || || || || |||||| ||||| | ||||
Sbjct 3094830 CACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCATAGCAACAAGAA 3094771
Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633
|||| ||||| || || | || | | | ||| | |||||| ||||||
Sbjct 3094770 AACATGAAGACAACTGTGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTGGACTCGCATGAG 3094711
Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGAT 48693
| || ||||||| ||||| || || ||||| | ||| | | ||| | ||| ||
Sbjct 3094710 TGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAACATCTTCACCAT 3094651
Query 48694 GTATACCTATAGATACACGCATTAACATAT 48723
|||| || ||||| || | |||||||||||
Sbjct 3094650 GTATTCCGATAGAAACTCTCATTAACATAT 3094621
Score = 84.2 bits (92), Expect = 2e-11
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 48927 TTTTTTGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCT 48986
||||| |||||||| || | || || |||| | |||||| ||||| |||||||||||
Sbjct 3092259 TTTTTGGTTTCTTTGTGCAAGTTTGAGATAGCCAGTCTAGCTGCTAAAATAGCATAATCC 3092200
Query 48987 GGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTA 49046
|||||| ||||| |||| | | |||| || ||||| |||| | |||| |||
Sbjct 3092199 GGATGATCAGTTGTCATTGTAGCTGCTGTTTCAGCAGCTAAATTATCCAGTTCTACAGTG 3092140
Query 49047 GTTACACCTGTATATATTCCTTGAATAACTTTCA 49080
|| || |||| || ||||| || |||||||
Sbjct 3092139 GTCACCCCTGAGTAGATTCCACTTATCACTTTCA 3092106
>seq1346
Length=947742
Score = 118 bits (130), Expect = 1e-21
Identities = 133/178 (75%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292
||||| || || | ||| |||||| || ||||| | |||||| ||||| ||||| ||
Sbjct 446261 ATATGTGTCAATAAGTAAGGAGTACATCTCAGAATGTACATTTTCCATAGCAATCTGGAA 446320
Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352
|| |||||| |||| |||||||| | || || || | |||||||| || | ||
Sbjct 446321 CCCATAAAAAAATCTAGCTTCTGTCACTTGGACCTCTTGTGAGAATCTTTCTACTAGGTT 446380
Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGT 19410
|||||| ||||||||||| ||||| |||||||| | |||||||| || ||||||
Sbjct 446381 TTCATTGACTATTCCATCTGACGCTGCGAAAAATGCAAGCACATGTTTGATGAAATGT 446438
Score = 109 bits (120), Expect = 6e-19
Identities = 158/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| |||||| |||| |||||| || || | |||||||| || || || || |
Sbjct 445068 CCTCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTTCT 445127
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | |||||| || ||||| || || || ||||| || ||||| |||||||||||||
Sbjct 445128 TCAGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAG 445187
Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162
| || | || ||||||| | | ||| || | ||||| | || |||||| || |
Sbjct 445188 CCACAATTCGTTCTCCAAATGTGGCAGTCTTGCTGGCGATCCACTGCAATGCCCAGTCGG 445247
Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205
||||||| || || || |||| ||||| || | ||| || ||
Sbjct 445248 CCTTCTTCTTCACGCAGGGCAGGGTCTCAATGGCATTGAACAG 445290
>seq1353
Length=2130601
Score = 89.7 bits (98), Expect = 6e-13
Identities = 237/360 (66%), Gaps = 9/360 (3%)
Strand=Plus/Minus
Query 136634 ATGACTCCTATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAA 136693
||||||||| | || |||||||| ||| |||| |||||||||| | || | |||
Sbjct 1736938 ATGACTCCTGTGCGGCCTATGTTGGCTGAAGCATGCAAATCTGTAGAAATGGCTATGAAA 1736879
Query 136694 AAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCAC 136753
|| | ||| || || || | | | ||||| ||||||||||||||| | ||||| || ||
Sbjct 1736878 AAATGTCCCAACGGTATGTATTCTGAAATCAAATATGACGGAGAAAGAGTACAAGTGCAT 1736819
Query 136754 AAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATAAA 136813
|| || || | ||||| || ||| | | ||||||| || | ||||||
Sbjct 1736818 AAAAAAGGTGATGACTTTCGATATTTCTCACGTGCCTTGAAACCAGTTATGCCTCATAAA 1736759
Query 136814 GTTGATTATCTTAATGAGTATATACCTAAAGCCTT---TAAAAATGTATCATCTCTTATT 136870
||| | || || || ||| |||| || || || | || ||| | | ||
Sbjct 1736758 GTTAGTCATTTTCGGGATTATTTACCAAAGGCGTTCCCTGAAGCTGT---GGATTTGATA 1736702
Query 136871 TTAGATTCAGAAATAGTACTAGTAGAT---AAAAATAATAAACCATTACCATTTGGCAGT 136927
|||||| | ||| || | | | ||| || | | |||||| || |||||||| |
Sbjct 1736701 TTAGATGCGGAAGTATTGATGATTGATGTGAACACTGGTAAACCTTTGCCATTTGGTACA 1736642
Query 136928 TTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGAT 136987
| ||| ||||||| | |||| || ||| | | |||| || ||||||||||||
Sbjct 1736641 CTAGGTGTACATAAGCAATCAGAATTCAAAGATGCGCAAGTATGCTTGTTTGTATTTGAT 1736582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562057500545640
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