Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1889 136 7e-27 seq1207 136 7e-27 seq1535 114 2e-20 seq2231 102 1e-16 seq1289 100 5e-16 seq1177 98.7 2e-15 >seq1889 Length=140810 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || | ||||| ||| | |||| ||||| |||||| Sbjct 27699 AATTTGCATACCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATT 27640 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||||| || | || || || || || || || || || | || ||| || Sbjct 27639 GTAATCGGATAGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTG 27580 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| ||||| ||||||||||| || || | ||| | |||| ||||||||| || Sbjct 27579 ATCAGGAGGGATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGA 27520 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||| ||||| | || ||||| ||||| || | || || ||||| || |||||||| Sbjct 27519 AGGCTCTACTTCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 27460 >seq1207 Length=6027761 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || | ||||| ||| | |||| ||||| |||||| Sbjct 2996449 AATTTGCATACCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATT 2996508 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||||| || | || || || || || || || || || | || ||| || Sbjct 2996509 GTAATCGGATAGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTG 2996568 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| ||||| ||||||||||| || || | ||| | |||| ||||||||| || Sbjct 2996569 ATCAGGAGGGATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGA 2996628 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||| ||||| | || ||||| ||||| || | || || ||||| || |||||||| Sbjct 2996629 AGGCTCTACTTCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2996688 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || | ||||| ||| | |||| ||||| |||||| Sbjct 2998015 AATTTGCATACCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATT 2998074 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||||| || | || || || || || || || || || | || ||| || Sbjct 2998075 GTAATCGGATAGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTG 2998134 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| ||||| ||||||||||| || || | ||| | |||| ||||||||| || Sbjct 2998135 ATCAGGAGGGATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGA 2998194 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||| ||||| | || ||||| ||||| || | || || ||||| || |||||||| Sbjct 2998195 AGGCTCTACTTCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2998254 Score = 129 bits (142), Expect = 1e-24 Identities = 175/243 (72%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 193118 GTAAGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGA 193177 ||| |||||| || | ||||| | | || ||||||| ||||| || | ||||| Sbjct 3525229 GTAGGTAATTAATTT-CCACCACGAAGACGGAGTACCAAGTGCAAGGTGGATTCTTTTTG 3525287 Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 || || || || || | || | || || |||||||| || || || || | | Sbjct 3525288 TATGTTGTAATCAGAGAGGGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACG 3525347 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||| || ||||| || || || || || || ||||||| ||| | |||| ||| || Sbjct 3525348 CTGTTGGTCTGGAGGGATACCCTCCTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGT 3525407 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || || | ||||||||||| ||||||||||||||| |||| ||||| |||||||| || Sbjct 3525408 GTCAGATGGCTCAACTTCTAAAGTTATAGTTTTACCAGTTAAAGTTTTCACAAATATCTG 3525467 Query 193358 CAT 193360 ||| Sbjct 3525468 CAT 3525470 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||| ||| || ||||| | ||||||||| | ||||| |||||||||||| Sbjct 3525469 ATGCCACCTCGCAAGCGGAGTACTAAATGCAATGTGGATTCTTTCTGAATATTATAGTCA 3525528 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || ||||| ||||| || || || || | |||||| || || Sbjct 3525529 GAGAGGGTACGGCCATCTTCCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGG 3525588 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||| | ||| | ||| ||| || || |||| || Sbjct 3525589 GGGATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCC 3525648 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || || || || || ||||| Sbjct 3525649 ACTTCAAGGGTGATGGTCTTTCCCGTGAGGGTCTTAACGAAAATCTGCAT 3525698 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || |||||||| || | || | | ||| || || || ||||||||||| || || | | Sbjct 3527341 ATGTTATAGTCTGAGAGAGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGC 3527400 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || ||||| |||||||| || || || | ||| | |||| ||| || Sbjct 3527401 TGCTGGTCTGGGGGAATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATGGTG 3527460 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| ||||||||| || || |||||||| || || || ||||| || || || ||| Sbjct 3527461 TCAGAAGGCTCAACTTCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGC 3527520 Query 193359 AT 193360 || Sbjct 3527521 AT 3527522 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || |||||||| || | || | | ||| || || || ||||||||||| || || | | Sbjct 3526201 ATGTTATAGTCTGAGAGAGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGC 3526260 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || ||||| |||||||| || || || | ||| | ||| ||| || Sbjct 3526261 TGCTGGTCTGGGGGAATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTCTCAATGGTG 3526320 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| ||||||||| || || |||||||| || || || ||||| || || || ||| Sbjct 3526321 TCAGAAGGCTCAACTTCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGC 3526380 Query 193359 AT 193360 || Sbjct 3526381 AT 3526382 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||||||||| || | ||| | ||| | |||| ||| || ||| || Sbjct 2997787 AATTTGCATTCCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTT 2997846 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| | ||| | || || || || || || || || || |||| ||| || Sbjct 2997847 GTAGTCGGAAAGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTG 2997906 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || ||||| || ||||| ||||| | || | |||| ||||| || || Sbjct 2997907 GTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGA 2997966 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||||||| || || ||||| || || | || || || || |||||||| Sbjct 2997967 TGGCTCTACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | ||| || || |||| || | || | ||| || ||||||||||| Sbjct 3525697 ATGCCACCACGCAAGCGCAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTATAGTCT 3525756 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || || || || || || || || || | ||| || || || Sbjct 3525757 GAGAGAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGG 3525816 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| ||||| || || ||||| | ||| | ||| || || || |||| || Sbjct 3525817 GGAATTCCCTCTTTGTCCTGAATTTTAGCTTTAACATTCTCGATGGTGTCAGAAGGTTCC 3525876 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| || || || || || ||||| || ||||| Sbjct 3525877 ACTTCAAGTGTGATGGTTTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3525926 >seq1535 Length=561959 Score = 114 bits (126), Expect = 2e-20 Identities = 91/107 (85%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 263795 GGGAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGTC 263854 ||||||||||| ||||||| ||| | |||||||| | ||| ||| ||||| |||||| | Sbjct 436894 GGGAGGTCCGTGGCTACTACGTAGGGCGGTGCTGGCAGGGAGCCGCTCTAATTCCTTGCC 436835 Query 263855 ATCAGATATGTTGAAGCGTATAAGCAATCATATAATGGTAATATAAT 263901 |||||||||||||| ||| ||||||||||||| ||||||| ||||| Sbjct 436834 ATCAGATATGTTGACGCG--TAAGCAATCATAT-ATGGTAAAATAAT 436791 >seq2231 Length=81345 Score = 102 bits (112), Expect = 1e-16 Identities = 87/105 (83%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 263800 GTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGTCATCAG 263859 |||||| ||||||| ||| | || | ||| | ||| ||| |||||||||||| |||||| Sbjct 58821 GTCCGTGGCTACTACGTAGGGCGATACTGGCAGGGAGCCGCTCTAACTCCTTGCCATCAG 58880 Query 263860 ATATGTTGAAGCGTATAAGCAATCATATAATGGTAATATAATATA 263904 |||| |||| ||| ||||||||||||| ||||||| |||||||| Sbjct 58881 ATATCTTGACGCG--TAAGCAATCATAT-ATGGTAAAATAATATA 58922 >seq1289 Length=1363321 Score = 100 bits (110), Expect = 5e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 193226 AAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTAT 193285 ||| | ||| ||||| |||||||| || || |||||||||||||| || |||| ||| | Sbjct 724772 AAATACTAACCTCTGCTGATCAGGCGGGATCCCTTCTTTATCTTGGATCTTGGCTTTGAC 724713 Query 193286 ATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTT 193345 |||| || |||||||| | ||| || || || || || || ||||| || || || || Sbjct 724712 ATTTTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTGAGGGTCTT 724653 Query 193346 TACAAATATTTGCATTTT 193363 ||| || || ||||| || Sbjct 724652 TACGAAGATCTGCATCTT 724635 >seq1177 Length=9749705 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 159886 TATCCGATGAAGTAATTCATCTATTATTTTCTGCAAATAGATGGGAAAAATATAATGAAA 159945 |||| ||||||| |||||||| | |||||||| ||| | ||||||| | | | || | Sbjct 8193317 TATCTGATGAAGCTATTCATCTCCTGTTTTCTGCTAATCGCTGGGAAAGAGCTCAGGAGA 8193376 Query 159946 TAATTAAAACGTTAGAAATGGGTATTACTATAATTATGGATAGATATTGCTATTCCGGAG 160005 | | || || || ||| ||| || | || ||| |||| ||||| |||||||| |||| Sbjct 8193377 TCCTGAAGACTTTGGAACAGGGAATCAACATTATTGTGGACAGATACTGCTATTCTGGAG 8193436 Query 160006 TAGCTTATTCAGCATCTAAAGGTA 160029 |||||||||| ||| | || |||| Sbjct 8193437 TAGCTTATTCTGCAGCAAAGGGTA 8193460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899572295290320