Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1889 122 1e-22 seq1207 122 1e-22 seq1346 116 5e-21 >seq1889 Length=140810 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || |||||||| || || |||||||| || ||||| || | Sbjct 27460 AAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCCT 27519 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| |||| ||| || ||| ||| || ||||||||||| || || ||||| || Sbjct 27520 TCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGAT 27579 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || || |||| | || || |||||| | ||||| | || |||| ||||| Sbjct 27580 CAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTATCCGATTAC 27639 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||||| ||||| | || |||||||| || || Sbjct 27640 AATATTCAGAAAGAATCTACCCTTCATTTGGTATT 27674 >seq1207 Length=6027761 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || |||||||| || || |||||||| || ||||| || | Sbjct 2996688 AAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCCT 2996629 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| |||| ||| || ||| ||| || ||||||||||| || || ||||| || Sbjct 2996628 TCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGAT 2996569 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || || |||| | || || |||||| | ||||| | || |||| ||||| Sbjct 2996568 CAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTATCCGATTAC 2996509 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||||| ||||| | || |||||||| || || Sbjct 2996508 AATATTCAGAAAGAATCTACCCTTCATTTGGTATT 2996474 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || |||||||| || || |||||||| || ||||| || | Sbjct 2998254 AAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCCT 2998195 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| |||| ||| || ||| ||| || ||||||||||| || || ||||| || Sbjct 2998194 TCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGAT 2998135 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || || |||| | || || |||||| | ||||| | || |||| ||||| Sbjct 2998134 CAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTATCCGATTAC 2998075 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||||| ||||| | || |||||||| || || Sbjct 2998074 AATATTCAGAAAGAATCTACCCTTCATTTGGTATT 2998040 Score = 120 bits (132), Expect = 4e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || |||||||| |||||||||||||| |||||||| || || Sbjct 2997796 AATGCAAATTTTCGTGAAGACATTGACGGGAAAAACTATTACTTTAGAAGTAGAGCCATC 2997737 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| ||||||||| |||||| ||||| || |||||||| || ||||| || Sbjct 2997736 AGACACTATTGAAAACGTGAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCA 2997677 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || ||||||| | || || |||||| | ||||| Sbjct 2997676 GCAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGA 2997641 Score = 107 bits (118), Expect = 3e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | ||||||||||| || ||| | ||||| ||| |||| Sbjct 3525926 ATGCAGATTTTTGTTAAGACCCTCACTGGAAAAACCATCACACTTGAAGTGGAACCTTCT 3525867 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| |||||| || || ||||| || || || ||||| || Sbjct 3525866 GACACCATCGAGAATGTTAAAGCTAAAATTCAGGACAAAGAGGGAATTCCCCCAGACCAG 3525807 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | || || |||||| | |||||| | | ||| | ||||| |||| Sbjct 3525806 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACTCTCTCAGACTATA-- 3525749 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 ||||||||| ||| | || ||||| || ||| Sbjct 3525748 ATATCCAAAAGGAGTCAACCCTTCACTTGGTG 3525717 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 155815 GTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCG 155874 |||| |||||||| || || |||| || |||||||| ||||| |||||||| ||||| | Sbjct 3528214 GTAACAAAATGCAGATTTTCGTTAAGACCTTGACTGGTAAAACCATTACATTGGAAGTTG 3528155 Query 155875 AAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTC 155934 || ||||||| || |||||| ||| ||||| ||||| ||||||||||| || | Sbjct 3528154 AACCCTCTGATACAATCGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCGC 3528095 Query 155935 CAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 | || || || | |||| | || || || ||| | ||||| Sbjct 3528094 CTGATCAGCAGCGCCTGATCTTCGCTGGAAAACAGTTGGAAGA 3528052 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | ||||| | ||||||||||| || ||| ||||||| ||| ||| Sbjct 3526154 ATGCAGATATTCGTCAAAACTCTCACTGGAAAAACCATCACACTAGAAGTAGAACCATCT 3526095 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| |||||| || || ||||| || || || ||||| || Sbjct 3526094 GACACAATAGAAAATGTCAAAGCTAAAATTCAGGACAAAGAGGGAATTCCCCCAGACCAG 3526035 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || ||||| | |||||| | | || || || || ||||| Sbjct 3526034 CAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGACTATAAC 3525975 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || || ||| |||| Sbjct 3525974 ATCCAGAAGGAGTCTACTCTCCATCTAGT 3525946 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | ||||| | ||||||||||| || ||| ||||||| ||| ||| Sbjct 3527294 ATGCAGATATTCGTCAAAACTCTCACTGGAAAAACCATCACACTAGAAGTAGAACCATCT 3527235 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| |||||| || || ||||| || || || ||||| || Sbjct 3527234 GACACAATAGAAAATGTTAAAGCTAAAATTCAGGACAAAGAGGGAATTCCCCCAGACCAG 3527175 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || ||||| | |||||| | | || || || || || || Sbjct 3527174 CAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGACTACAAC 3527115 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || || ||| |||| Sbjct 3527114 ATCCAGAAGGAGTCTACTCTCCATCTAGT 3527086 >seq1346 Length=947742 Score = 116 bits (128), Expect = 5e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||| | || | ||||| ||||| || | || || ||||| |||||||||| Sbjct 446242 TTTCTTTCGGGTCCCTGATATATGTGTCAATAAGTAAGGAGTACATCTCAGAATGTACAT 446301 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTAT 18530 |||||||||| ||||| || | |||||| ||||||| || | ||| | ||| Sbjct 446302 TTTCCATAGCAATCTGGAACCCATAAAAAAATCTAGCTTCTGTCACTTGGACCTCTTGTG 446361 Query 18531 AAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAA 18590 | ||||||||||| | || ||||| ||||| || || | | |||||||||||| | | Sbjct 446362 AGAATCTTTCTACTAGGTTTTCATTGACTATTCCATCTGACGCTGCGAAAAATGCAAGCA 446421 Query 18591 CATATTTAATGAAATGT 18607 ||| ||| ||||||||| Sbjct 446422 CATGTTTGATGAAATGT 446438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731805207531600