Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1207 158 2e-33 seq1889 154 3e-32 seq1168 87.8 4e-12 >seq1207 Length=6027761 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | |||| ||| | ||||| ||| || ||| ||||| ||| Sbjct 3525925 ATGCCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTATAGTCA 3525984 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| |||||||| || ||||||||||| || | ||| || || || Sbjct 3525985 GACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGG 3526044 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || || |||||| ||| ||||| ||| | || || | |||| Sbjct 3526045 GGAATTCCCTCTTTGTCCTGAATTTTAGCTTTGACATTTTCTATTGTGTCAGATGGTTCT 3526104 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || |||||||| ||||| | ||||| | ||||||||||| Sbjct 3526105 ACTTCTAGTGTGATGGTTTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3526154 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || ||||| ||||| | |||| ||||| ||||| ||||| Sbjct 2996456 ATACCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCG 2996515 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||| ||| | || ||||| || || || || ||||| | || ||| |||||||| Sbjct 2996516 GATAGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGA 2996575 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||||||||| || ||| ||| ||||| |||| ||| || | ||| Sbjct 2996576 GGGATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCT 2996635 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||||| || ||||| || ||||| || | ||| ||||||||||| Sbjct 2996636 ACTTCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2996688 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || ||||| ||||| | |||| ||||| ||||| ||||| Sbjct 2998022 ATACCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCG 2998081 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||| ||| | || ||||| || || || || ||||| | || ||| |||||||| Sbjct 2998082 GATAGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGA 2998141 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||||||||| || ||| ||| ||||| |||| ||| || | ||| Sbjct 2998142 GGGATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCT 2998201 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||||| || ||||| || ||||| || | ||| ||||||||||| Sbjct 2998202 ACTTCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2998254 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | |||| ||| | ||||| ||| || ||| || || ||| Sbjct 3527065 ATGCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCA 3527124 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| |||||||| || ||||||||||| || | ||| || || || Sbjct 3527125 GACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGG 3527184 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || || |||||| ||| ||||| ||| | || || | |||| Sbjct 3527185 GGAATTCCCTCTTTGTCCTGAATTTTAGCTTTAACATTTTCTATTGTGTCAGATGGTTCT 3527244 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || |||||||| ||||| | ||||| | ||||||||||| Sbjct 3527245 ACTTCTAGTGTGATGGTTTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3527294 Score = 140 bits (154), Expect = 6e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 || |||||||| | ||||||||||||||||| ||||| || |||| || || || || || Sbjct 2997794 ATTCCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGA-ATGTTGTAGTC 2997852 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || ||| | || ||||| || || || || ||||| |||| ||| || || || Sbjct 2997853 GGAAAGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGG 2997912 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| |||||| || ||||| |||| ||||| | || Sbjct 2997913 GGGAATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTC 2997972 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || |||||||| || || ||||| || | || || ||||| Sbjct 2997973 TACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | |||| ||| | ||||| ||| || ||| || || ||| Sbjct 3526381 ATGCCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCA 3526440 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| |||||||| || ||||||||||| || | |||||| || || Sbjct 3526441 GACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGG 3526500 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| ||||| || | || || | ||| Sbjct 3526501 GGGATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCC 3526560 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || ||||| | || |||| ||| |||||||| Sbjct 3526561 ACTTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3526610 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | |||| ||| | ||||| ||| || ||| || || ||| Sbjct 3527521 ATGCCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCA 3527580 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| |||||||| || ||||||||||| || | |||||| || || Sbjct 3527581 GACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGG 3527640 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| ||||| || | || || | ||| Sbjct 3527641 GGGATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCC 3527700 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || ||||| | || |||| ||| |||||||| Sbjct 3527701 ACTTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3527750 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | |||| ||| | ||||| ||| || ||| || || ||| Sbjct 3526609 ATGCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCA 3526668 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| |||||||| || ||||||||||| || | |||||| || || Sbjct 3526669 GACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGG 3526728 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| ||||| || | || || | ||| Sbjct 3526729 GGGATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCC 3526788 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || ||||| | || |||| ||| |||||||| Sbjct 3526789 ACTTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3526838 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | |||| ||| | ||||| ||| || ||| || || ||| Sbjct 3526837 ATGCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCA 3526896 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| |||||||| || ||||||||||| || | |||||| || || Sbjct 3526897 GACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGG 3526956 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| ||||| || | || || | ||| Sbjct 3526957 GGGATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCC 3527016 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || ||||| | || |||| ||| |||||||| Sbjct 3527017 ACTTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3527066 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | ||| || || || || | ||||| || || |||||||| Sbjct 3525244 CCACCACGAAGACGGAGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAG 3525303 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || ||| | || ||||||||||||||||| ||||| | | |||||| || || || Sbjct 3525304 AGGGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGG 3525363 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || || || || ||||| ||| ||||| || | || || | || ||| Sbjct 3525364 ATACCCTCCTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACT 3525423 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| ||| || |||||||||||||| ||||| | |||||||||||| Sbjct 3525424 TCTAAAGTTATAGTTTTACCAGTTAAAGTTTTCACAAATATCTGCAT 3525470 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | |||| ||| | ||||| ||| || ||| || || ||| Sbjct 3527749 ATGCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCA 3527808 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| |||||||| || ||||||||||| || | ||| || || || Sbjct 3527809 GACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGG 3527868 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || || ||||| ||| ||||| || | ||||| | || Sbjct 3527869 GGAATTCCCTCTTTGTCCTGAATTTTTGCTTTGACATTCTCAATGGTGTCTGAAGGCTCC 3527928 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || |||||||| ||||| | ||||| | || |||||||| Sbjct 3527929 ACTTCAAGTGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 3527978 Score = 127 bits (140), Expect = 4e-24 Identities = 147/197 (75%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || ||||| || || || | || || | || ||||| ||||| ||||| |||| Sbjct 3528018 CTTTTGA-ATATTGTAGTCGGAGAGGGTGCGACCGTCTTCCAACTGTTTTCCAGCGAAGA 3528076 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | | ||| |||||||| || || |||||||| ||||| ||||| |||||| || Sbjct 3528077 TCAGGCGCTGCTGATCAGGCGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTTACGTTTT 3528136 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | ||| || | ||| ||||| | ||||||||||||||||| || || |||| | Sbjct 3528137 CGATTGTATCAGAGGGTTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTCTTAACGA 3528196 Query 192527 ATATCTGCATTTTATTA 192543 | ||||||||||| ||| Sbjct 3528197 AAATCTGCATTTTGTTA 3528213 >seq1889 Length=140810 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || ||||| ||||| | |||| ||||| ||||| ||||| Sbjct 27692 ATACCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCG 27633 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||| ||| | || ||||| || || || || ||||| | || ||| |||||||| Sbjct 27632 GATAGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGA 27573 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||||||||| || ||| ||| ||||| |||| ||| || | ||| Sbjct 27572 GGGATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCT 27513 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||||| || ||||| || ||||| || | ||| ||||||||||| Sbjct 27512 ACTTCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 27460 >seq1168 Length=7897672 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 125580 ATGATCTTCGCCTGGATCGTCGCCTTCTTTCCATTGCATTATTTCTACTTTGCAGAAAGC 125639 ||| |||| | |||||||||||||||| |||| ||| || || ||||| || ||||| Sbjct 2386177 ATGGTCTTTGGCTGGATCGTCGCCTTCCATCCACCTCATAATCTCCACTTTACAAAAAGC 2386118 Query 125640 GCATCTTACTTCGTCACCTCTTTGAAGATAATAGAAACCATTTTTAGCCAACGTTTCA-- 125697 || || ||||||||| | || | |||||| ||||| || ||| | |||| | Sbjct 2386117 ACACCTAACTTCGTCATTTTTTCCCAAATAATAAAAACCGTTGCGAGCTA--GTTTTAGT 2386060 Query 125698 GGCGAAAGAAACGTTAATGGCCAATTAGTAAATGTTTTTATTCGTTCACTTTCT 125751 || || ||||| | | |||||||| |||||||||| |||||| |||| Sbjct 2386059 GGTGATAGAAATGGGACAGGCCAATTGACGAATGTTTTTAAGCGTTCATCTTCT 2386006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984387907741350