Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq1889 145 1e-29
seq1207 145 1e-29
seq1168 89.7 9e-13
>seq1889
Length=140810
Score = 145 bits (160), Expect = 1e-29
Identities = 172/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || ||||| ||||| | |||| ||||| |||||| |||||
Sbjct 27692 ATACCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCG 27633
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|||| | ||| |||| ||||| || || || || || || | || ||| || |||||
Sbjct 27632 GATAGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGA 27573
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| ||||||||||| || ||| ||| ||||| |||||||| || | |||
Sbjct 27572 GGGATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCT 27513
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||||| | ||||| || ||||| || ||||| || | || |||||||||||
Sbjct 27512 ACTTCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 27460
>seq1207
Length=6027761
Score = 145 bits (160), Expect = 1e-29
Identities = 172/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || ||||| ||||| | |||| ||||| |||||| |||||
Sbjct 2996456 ATACCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCG 2996515
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|||| | ||| |||| ||||| || || || || || || | || ||| || |||||
Sbjct 2996516 GATAGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGA 2996575
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| ||||||||||| || ||| ||| ||||| |||||||| || | |||
Sbjct 2996576 GGGATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCT 2996635
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||||| | ||||| || ||||| || ||||| || | || |||||||||||
Sbjct 2996636 ACTTCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2996688
Score = 145 bits (160), Expect = 1e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| |||||||| | |||||||||||||||| ||||| ||| || ||| || || ||
Sbjct 2997794 ATTCCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCG 2997853
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | ||| |||| ||||| || || || || || || |||| ||| ||||| ||
Sbjct 2997854 GAAAGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGG 2997913
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || ||||| |||||| || ||||| ||||| ||||| | |||
Sbjct 2997914 GGAATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCT 2997973
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||||| || |||||||| || || ||||| || | ||| || |||||
Sbjct 2997974 ACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023
Score = 145 bits (160), Expect = 1e-29
Identities = 172/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || ||||| ||||| | |||| ||||| |||||| |||||
Sbjct 2998022 ATACCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCG 2998081
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|||| | ||| |||| ||||| || || || || || || | || ||| || |||||
Sbjct 2998082 GATAGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGA 2998141
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| ||||||||||| || ||| ||| ||||| |||||||| || | |||
Sbjct 2998142 GGGATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCT 2998201
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||||| | ||||| || ||||| || ||||| || | || |||||||||||
Sbjct 2998202 ACTTCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2998254
Score = 145 bits (160), Expect = 1e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||| || | |||| ||| | ||||| ||| || || ||||| ||
Sbjct 3525925 ATGCCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTATAGTCA 3525984
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| || | || | || |||||||| || |||||||| || || | ||| ||||| ||
Sbjct 3525985 GACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGG 3526044
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| ||||| || || |||||| ||| ||||| ||| || || || | ||||
Sbjct 3526045 GGAATTCCCTCTTTGTCCTGAATTTTAGCTTTGACATTTTCTATTGTGTCAGATGGTTCT 3526104
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|||||||| || |||||||| ||||| | ||||| | ||||||||||||
Sbjct 3526105 ACTTCTAGTGTGATGGTTTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3526154
Score = 136 bits (150), Expect = 7e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | || || | |||| ||| | ||||| ||| || || || || ||
Sbjct 3527065 ATGCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCA 3527124
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| || | || | || |||||||| || |||||||| || || | ||| ||||| ||
Sbjct 3527125 GACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGG 3527184
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| ||||| || || |||||| ||| ||||| ||| || || || | ||||
Sbjct 3527185 GGAATTCCCTCTTTGTCCTGAATTTTAGCTTTAACATTTTCTATTGTGTCAGATGGTTCT 3527244
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|||||||| || |||||||| ||||| | ||||| | ||||||||||||
Sbjct 3527245 ACTTCTAGTGTGATGGTTTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3527294
Score = 127 bits (140), Expect = 4e-24
Identities = 142/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
|||||| || || || | | || |||| ||||| ||||| ||||| || || | |
Sbjct 3528024 AATATTGTAGTCGGAGAGGGTGCGACCGTCTTCCAACTGTTTTCCAGCGAAGATCAGGCG 3528083
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||| || ||||| || || |||||||| ||||| ||||| |||||| || || ||
Sbjct 3528084 CTGCTGATCAGGCGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTTACGTTTTCGATTGT 3528143
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
||| || | ||| ||||| | ||||||||||||||||| || || |||| ||| |||||
Sbjct 3528144 ATCAGAGGGTTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTCTTAACGAAAATCTG 3528203
Query 172067 CATTTTATTA 172076
|||||| |||
Sbjct 3528204 CATTTTGTTA 3528213
Score = 125 bits (138), Expect = 1e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
||||| | ||| || | ||| || || || || | ||||| || || ||||| ||
Sbjct 3525244 CCACCACGAAGACGGAGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAG 3525303
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
| | ||| |||| ||||||||||||||||| || || | | ||||||||| || ||
Sbjct 3525304 AGGGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGG 3525363
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022
|| || || || || || ||||| ||| ||||| || || || || | || |||
Sbjct 3525364 ATACCCTCCTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACT 3525423
Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|||| ||| || |||||||||||||| ||||| | |||||||||||
Sbjct 3525424 TCTAAAGTTATAGTTTTACCAGTTAAAGTTTTCACAAATATCTGCAT 3525470
>seq1168
Length=7897672
Score = 89.7 bits (98), Expect = 9e-13
Identities = 139/197 (71%), Gaps = 4/197 (2%)
Strand=Plus/Minus
Query 104980 GGACATTTTGATGCCCATTTTTTATGATCTTCGCCTGGATCGTCGCCTTCTTTCCATTGC 105039
|| |||| || ||||| | ||| |||| | |||||||||||||||| |||| |
Sbjct 2386200 GGGCATTGTGGCGCCCACCGCTGATGGTCTTTGGCTGGATCGTCGCCTTCCATCCACCTC 2386141
Query 105040 ATTATTTCTACTTTGCAGAAAGCGCATCTTACTTCGTCACCTCTTTGAAGATAATAGAAA 105099
|| || || ||||| || ||||| || || ||||||||| | || | |||||| |||
Sbjct 2386140 ATAATCTCCACTTTACAAAAAGCACACCTAACTTCGTCATTTTTTCCCAAATAATAAAAA 2386081
Query 105100 CCATTTTTTGCCAACGTTTCA--GGTGAAAGAAACGTCAATGGCCAATTAGTAAATGTTT 105157
|| || || | |||| | ||||| ||||| | | |||||||| |||||||
Sbjct 2386080 CCGTTGCGAGCTA--GTTTTAGTGGTGATAGAAATGGGACAGGCCAATTGACGAATGTTT 2386023
Query 105158 TTATTCGTTCACTTTCT 105174
||| |||||| ||||
Sbjct 2386022 TTAAGCGTTCATCTTCT 2386006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905053395025800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |