Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1251 120 9e-22 seq1234 118 3e-21 seq1327 109 2e-18 >seq1251 Length=5235866 Score = 120 bits (132), Expect = 9e-22 Identities = 618/974 (63%), Gaps = 25/974 (3%) Strand=Plus/Minus Query 155474 TGGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTAC 155530 ||| || |||| ||||||||||| ||||||| ||| ||||| || ||| || || Sbjct 3095576 TGGATAGTAATTGACATCAATAATTTTATTTAGATTCTGGGTAAC---TATCTTTGTGAC 3095520 Query 155531 GTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAAT 155590 ||| | ||| | ||| | ||||| || ||||| |||||||| | | |||| Sbjct 3095519 CTCTTTAAGTTTGGTAAAGTTGTAAGTTTTGTCATCATTCACAAACATGTTCAAAGCAAT 3095460 Query 155591 AGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGC 155649 ||| || | ||||| || || || || | || | | | || || ||||| || || Sbjct 3095459 AGATGCTAAGTTACAAACTGCTGTTTCATCTGCAGATG-TATACTCAACAATTTCTGTGC 3095401 Query 155650 ACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCAT 155709 ||| ||| || || || ||||||| ||| ||||| ||| || || ||||| |||| Sbjct 3095400 ACAAGTTGCTACATTTAATTGTGCCTAGATTTTTCTGATTACTCTTCCTATTACAGGCAT 3095341 Query 155710 CCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT--CTTTAGCCA 155767 ||||||||| || ||||| ||||| || || | ||||| || | ||| |||| ||| Sbjct 3095340 CCTTGTATAACATATATGGTGTTCCAGTTTCTACTTGTGCTTCAATAATAGCTTT--CCA 3095283 Query 155768 GAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATA--TTTCATATAC 155825 || | || || | ||| || || | |||| ||||| ||||||| | Sbjct 3095282 CAGTATCTGTGCTTTGACTTGTTTCACATAACGTTTTTCCTGTTCATATTTTTCATACAA 3095223 Query 155826 AGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAAC 155885 ||| | | || ||||| | ||||| | || || | | || ||||| | Sbjct 3095222 AGCCT--CAAACTCTTCACCCCAGCAATCGGCTAAACCTGGAGAATCATGAGGGCACATA 3095165 Query 155886 AGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCA 155945 | |||| || ||| ||||| | |||||||| ||| ||| | ||| Sbjct 3095164 ATACTCCAATCTTCATTTTTTTCAACACGTTTCATAAATAAATCTGGAATCCACAGTGCA 3095105 Query 155946 TAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAAT 156005 || || || || ||||| | ||||| | || |||||||| || |||| || Sbjct 3095104 TAAAAGAGTTCTCTTGCACGTACTTCCTCTTTACCATGATTCTTTTTTAAATCTAGAAAC 3095045 Query 156006 TCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TCTTG 156062 || ||||||| ||| || || | ||||| || ||| || || | ||| Sbjct 3095044 TCGAATATATCAGCATGCCAGGGTTCTAAATACACTGCGAAAGCGCCCGGCCGTTTATTG 3094985 Query 156063 CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCA 156122 || || || || ||||| | ||||| |||||| | |||| | |||||| | |||||| Sbjct 3094984 CCGCCTTGGTCCACATATCTGGCAGTGTTATTGTAAACACGCAACATAGGCACTATACCA 3094925 Query 156123 TTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGT 156182 || || ||||| ||||| ||| | | || | | || || | ||| Sbjct 3094924 TTTGAGACACCATTTGTTCCAGCAATGTAGGTGCCTTTGGCTCTAATGCAGTGCACATGA 3094865 Query 156183 AGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATA 156242 | ||||||||||| | ||||||| || ||| || | || | ||| | | || Sbjct 3094864 ACACCAATACCACCAGCTGATTTAGAGATCAAAGCACACTGTTTCAAAGTGTCATATATC 3094805 Query 156243 CCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGT 156302 || ||||| |||||| ||| | | ||| | || ||| || || |||| || Sbjct 3094804 CCCTCAATGCTGTCATCTCTCATAGCAACAAGAAAACATGAAGACAACTGTGGTCTAGGG 3094745 Query 156303 GTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCG 156362 || |||| || || || || | |||||| | ||||| || | ||| | ||| | Sbjct 3094744 GTGGCAGCAGCAAAAAGAGTTGGACTCGCATGAGTGAAATATTTCTCAGATAATAAATTG 3094685 Query 156363 TATGTCTCCTTAAT--CTTC-TCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATC 156419 ||||| || ||| | | |||| || || || || | |||||| || ||||| Sbjct 3094684 TATGT---CTGAATGGCGGCATCAACATCTTCACCATGTATTCCGATAGAAACTCTCATT 3094628 Query 156420 CACATATGCTGAGG 156433 |||||||||| || Sbjct 3094627 AACATATGCTGCGG 3094614 >seq1234 Length=7085824 Score = 118 bits (130), Expect = 3e-21 Identities = 225/326 (69%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 ||| ||| | ||||||||||||||||| || ||||| | | |||||||| || || | Sbjct 7064607 CCTCTTTCTGCCAACAGCATCAATTTCATCTATGAATAGAATACACGGAGCATGTTTACG 7064548 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || || | ||| | || | || | ||| | || | |||||| |||| |||| || Sbjct 7064547 GGCCATCGAAAACATGTCACGCACTCTGGAAGGACCGACACCAACGAACATCTCTAAGAA 7064488 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 |||||| | ||||| ||||| | ||||||||||| || ||| |||| | || || Sbjct 7064487 TTCAGATCCAGATACAGTTATGAAAGGAACATTTGCTTCTCCGGCTGTTGCCTTTGCTAG 7064428 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 ||| || ||||| || ||||| ||||| || | | || ||||||| | | ||| | | Sbjct 7064427 AAGCGTTTTACCAGTACCAGGCGGTCCTGTTAGCAAAGCT-CCTTTGGGAATCTTGGCTC 7064369 Query 289260 AGCAGAC-TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 | | | | || | || || |||| | ||| | |||| ||| | ||| |||| Sbjct 7064368 CGAGGTCAATGTACTGCTGTGGATTCTTCAGAAAGTTGACAAACTCCATTATTTC-TATT 7064310 Query 289319 TT-GCCTCATCACATCCTGCTACATC 289343 || ||||| || || || |||||||| Sbjct 7064309 TTGGCCTCTTCGCAGCCAGCTACATC 7064284 >seq1327 Length=2324893 Score = 109 bits (120), Expect = 2e-18 Identities = 222/330 (67%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| || ||||| |||||| ||| || |||||||| Sbjct 1759171 ATTTCTCACTGTACCATCATAGTGAACCATAACAGACTCCATAGCCTTTATCAAACGACG 1759112 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||| || |||||| | ||||||||||| |||||||| ||||| |||||||||| Sbjct 1759111 CTGAATGTATCCAGTTTCGGCAGTTTTTACAGCAGTATCAATGAGACCCTCACGACCACC 1759052 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| || ||||| | | ||| ||| | || ||| | | || | || || || Sbjct 1759051 CATGGCGTGGAAATAAAATTCTGAAGGTGTCAATCCGGCAAGATATGAATTTTCTACAAA 1758992 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||| | | || || || |||| ||| | || || || | || || || | Sbjct 1758991 ACCTCTAGATTCTGGACCATAGTCGTCTTTGATGAAATGGGGTAATGTTCTCTTGCGGAA 1758932 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || |||| || |||||||| || ||||| || || || | || | ||| | ||| || Sbjct 1758931 TCCAAATGGAATTCGCTTTCCTTCTACGTTTTGTTGACCTACACAAGCAATAACCTGAGA 1758872 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGC 302867 |||||| | || || ||||| ||||| Sbjct 1758871 AATATTAATATTGGATCCTTTGGAACCAGC 1758842 Score = 109 bits (120), Expect = 2e-18 Identities = 222/330 (67%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| || ||||| |||||| ||| || |||||||| Sbjct 1759662 ATTTCTCACTGTACCATCATAGTGAACCATAACAGACTCCATAGCCTTTATCAAACGACG 1759603 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||| || |||||| | ||||||||||| |||||||| ||||| |||||||||| Sbjct 1759602 CTGAATGTATCCAGTTTCGGCAGTTTTTACAGCAGTATCAATGAGACCCTCACGACCACC 1759543 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| || ||||| | | ||| ||| | || ||| | | || | || || || Sbjct 1759542 CATGGCGTGGAAATAAAATTCTGAAGGTGTCAATCCGGCAAGATATGAATTTTCTACAAA 1759483 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||| | | || || || |||| ||| | || || || | || || || | Sbjct 1759482 ACCTCTAGATTCTGGACCATAGTCGTCTTTGATGAAATGGGGTAATGTTCTCTTGCGGAA 1759423 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || |||| || |||||||| || ||||| || || || | || | ||| | ||| || Sbjct 1759422 TCCAAATGGAATTCGCTTTCCTTCTACGTTTTGTTGACCTACACAAGCAATAACCTGAGA 1759363 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGC 302867 |||||| | || || ||||| ||||| Sbjct 1759362 AATATTAATATTGGATCCTTTGGAACCAGC 1759333 Score = 98.7 bits (108), Expect = 3e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| || ||||| |||||| ||| || |||||||| Sbjct 1760683 ATTTCTCACTGTACCATCATAGTGAACCATAACAGACTCCATAGCCTTTATCAAACGACG 1760624 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||| || |||||| | ||||||||||| |||||||| ||||| |||||||||| Sbjct 1760623 CTGAATGTATCCAGTTTCGGCAGTTTTTACAGCAGTATCAATGAGACCCTCACGACCACC 1760564 Query 302658 CATAGCATGGAA 302669 ||| || ||||| Sbjct 1760563 CATGGCGTGGAA 1760552 Score = 98.7 bits (108), Expect = 3e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| || ||||| |||||| ||| || |||||||| Sbjct 1815265 ATTTCTCACTGTACCATCATAGTGAACCATAACAGACTCCATAGCCTTTATCAAACGACG 1815206 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||| || |||||| | ||||||||||| |||||||| ||||| |||||||||| Sbjct 1815205 CTGAATGTATCCAGTTTCGGCAGTTTTTACAGCAGTATCAATGAGACCCTCACGACCACC 1815146 Query 302658 CATAGCATGGAA 302669 ||| || ||||| Sbjct 1815145 CATGGCGTGGAA 1815134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471679920202437