Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq1527 217 1e-51
seq1172 190 2e-43
seq1459 86.0 5e-12
>seq1527
Length=671880
Score = 217 bits (240), Expect = 1e-51
Identities = 544/812 (67%), Gaps = 27/812 (3%)
Strand=Plus/Minus
Query 28881 CATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAACGACGCCCTTAAA 28940
||| || | ||||| ||| | || ||||| || || || ||| |||||||| | |||
Sbjct 504537 CATTTGCTGTACGGATTCATCCCAATTTGTGGAGGTGATGGGATCAACGACAGTTTGAAA 504478
Query 28941 ACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCCGTTCAGATTTTAAA 29000
|| || ||||| |||| ||||||| ||||||| ||||| ||| || ||
Sbjct 504477 GAAATCGAAGGCAGTTTCCAAGCTTTGCAACGATCGTGCAGTGGCCGGGAAGACTTCAAG 504418
Query 29001 GTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGGGCGTGTCTGCGTGG 29060
||| | |||||||| || |||||||| | || || || || ||||| ||||| | |||
Sbjct 504417 GTTTCGATTCACGACCCGTGGGCCGCTCTCCAGAAGCCACAGAAGGGATTGTCTTCATGG 504358
Query 29061 AACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATG--GCTGCCAAGTTGGCCAATCCAC 29118
||||| || ||||||||||| || || ||| | ||| | || || || || ||
Sbjct 504357 AACGAACCTTACAAAGGCAACTTTGGACAGTTGATGATGTTG--AAACAAGCTAAACCCG 504300
Query 29119 ACATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCGA-CCCTTTTTATTTT--- 29174
|||| ||||| | || ||||| || || ||||| ||| | || ||||| || || |
Sbjct 504299 ACATGAAAATCTTGCCTTCCATCGGTGGGTGGACTTTGGCTGATCCCTTCTTCTTCTTCA 504240
Query 29175 ATG-CACGACGCGGAGAAACGGCGCGTGTTTGTGGACTCGGTCGAGGAATTTTTGCAGGT 29233
|| || | | |||| || | ||||| | || || |||| || | ||
Sbjct 504239 CTGACAAGTCTAAGAGAGACCG-----ATTTGTAGCTTCAGTGAAGGACTTCCTCGAGAC 504185
Query 29234 GTGGAAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGGGCGGTAAAGGCGCTAA 29293
||||| || || ||||| || ||||| |||||||| || || ||||| ||||| || ||
Sbjct 504184 CTGGAAGTTCTTCGACGGTGTTGACATCGACTGGGAGTTCCCTGGCGGCAAAGGTGCCAA 504125
Query 29294 CCCGACACTTGGCA---ACGGGGAGCGCGACGCCGACACGTATAACATTTTACTGAAGGA 29350
||| | ||||||| | ||| | || | | |||| | | ||| |||| ||
Sbjct 504124 CCCTAACCTTGGCAGTCCCAAGGATGGTGATG--TATACGTGTCGC---TTA-TGAAAGA 504071
Query 29351 ATTGCGCGCAATGCTGGATAAACTG-CAATTGCAAACGGGTAAAACGTATGAATTGACAA 29409
| | || | |||| || || | ||| || || |||| || || | ||||| ||||
Sbjct 504070 ACTTCGTGAAATGTTGAATGAGCTGTCAGCTG-AAACTGGAAAGAAATATGAGCTGACTT 504012
Query 29410 GCGCAATCAGCTCTGGCCACGACAAAATTGCTGTAGTGAAATACGACGTTGTGCAAAAAT 29469
|| |||||| | || |||||||| || ||||| ||| | | | || ||||
Sbjct 504011 CAGCCATCAGCGCCGGTTGGGACAAAATCCAAGTGGTGAACTACAAAGAAGCCCAGAAAT 503952
Query 29470 TTCTTGATAAAATATTTCTAATGAGTTACGATTTTAAAGGCGCATGGTCAAACACCGATT 29529
| ||| | || || | |||||||| || || ||||| || ||||| ||| | ||
Sbjct 503951 ACATGGATCACATTTTCTTCATGAGTTATGACTTCAAAGGAGCCTGGTCGAACGACACTT 503892
Query 29530 TGGGATATCAAACTACACTCTACGCACCGAGTTGGAATCCCAACGAGCTTTACAACACTG 29589
|||| | || || |||| ||||| || ||||| || || ||| ||||| || |
Sbjct 503891 TGGGCCACCAGACATCACTGTACGCGCCTGCGTGGAAACCAAAGGAGACTTACACGACAG 503832
Query 29590 ACCACGCCGTAAAGTCGCTCACTAAC-CAAGGCGTGGACCCGCGCAAAATTATTGTGGGC 29648
| || || || | || || | || |||||| ||||| || || || || |||
Sbjct 503831 ATTTCGGAGTTAAATACCT-GTTAGCTCAGGGCGTGAACCCGAAGAAGATAATAGTCGGC 503773
Query 29649 GTCGCCATGTACGGCCGCGGTTGGACGGGCGT 29680
|| || ||||||||||| |||||||| || ||
Sbjct 503772 GTAGCTATGTACGGCCGTGGTTGGACAGGAGT 503741
>seq1172
Length=1933827
Score = 190 bits (210), Expect = 2e-43
Identities = 146/171 (85%), Gaps = 3/171 (2%)
Strand=Plus/Plus
Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560
|||| ||||||||| | ||||||||||| || |||||||||||||||||||| |||||
Sbjct 103883 CCAA-CGCCTTGGCCACCTCGGGCATGTTCACAATGACAGTCTTGATGCCGTTCCCCTTG 103941
Query 34561 CCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTG 34620
|| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 103942 CCCTCCACCTTGGCGCAGATGCGCGGCATCTTGTAGCGGTAGAACGCGTCGGCCACATTG 104001
Query 34621 CGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTTACTTATAACTAACTA 34671
||||| |||||||| | |||||| || || | || || ||||||| ||
Sbjct 104002 CGGTTCACGTTCACGGACCCCATGGT--TTGATACTAATTCTAACTAATTA 104050
Score = 159 bits (176), Expect = 3e-34
Identities = 152/196 (78%), Gaps = 9/196 (5%)
Strand=Plus/Plus
Query 33584 CGGCCACTTTGGGCAGCAGCGCCTGGTCCAAAACGCAcagcgcggtga---------gcg 33634
||| ||| |||||||||||||| ||| || ||||||||||| |||
Sbjct 93054 CGGGCACCTTGGGCAGCAGCGCGGGGTGGTGCGCGGCCAGCGCGGTGACGGCGTGCAGCG 93113
Query 33635 cggcccgctgcgcgcgcagatcgccgcgcgtaaactgcagcagcagcgcgcggtacttgc 33694
|||| ||||| ||||| | ||| |||||| | | |||||||||||||||||| | |
Sbjct 93114 CGGCGCGCTGTGCGCGGGGCTCGGCGCGCGCCAGCCGCAGCAGCAGCGCGCGGTGCCGCC 93173
Query 33695 gcACGTCCCCGGCGAACGCCGCCGGCCTCACCAGCACCTCGAACAGCACCAGCGGCGCCT 33754
|||||||| || | | || ||| |||| |||||||||||||||| ||||||||||||||
Sbjct 93174 GCACGTCCGCGCCCAGCGACGCGGGCCGCACCAGCACCTCGAACGCCACCAGCGGCGCCT 93233
Query 33755 TCGACTTCACCTCCAG 33770
||||||||||||||||
Sbjct 93234 TCGACTTCACCTCCAG 93249
Score = 125 bits (138), Expect = 6e-24
Identities = 129/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260
|| |||||||| |||| ||| || ||||| |||||||| ||||| | | |||||
Sbjct 102413 GCAGGCGGGTTCTTCAATATAAACGTGTTCAGCTTATGGTTGAAGTCCAACTGCCCGTGG 102472
Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320
|||||||| || ||||||||||| |||| |||| ||| | || || ||||| ||
Sbjct 102473 TAACCGCAAGCCTTGCAGCCCTGGGAGATGGTGTTGCGTTTGGTTGAAACTATGAGTTCC 102532
Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAAC 34369
|| ||||| ||||| |||||||| || | || ||||||||||||||||
Sbjct 102533 GTTTCCGGATTGTCGCATTCCGGGCAGAGTACGAACTTGCGGATGAAAC 102581
Score = 113 bits (124), Expect = 4e-20
Identities = 116/149 (78%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 33427 TCCTCGGCCTGCTGCAGCCAGTCCAGGAAGGGCTGCGCGCGGCGCCGCACGTCCGCCATC 33486
|||||||| | | ||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 76406 TCCTCGGCGTCGTTGAGCCAGTCCAGGAAGGGCTGCGCGCGGCGCCGCACCTCGGCCACC 76465
Query 33487 TCCTCGCGGCTTAGCG-CTTTGCGGGACGGCTTGTAAAACCACTCCACGATCGCTTTCTT 33545
|||| || | ||| ||||| |||||||| | |||||||| |||||| ||||
Sbjct 76466 ACCTCCTTGC-TGGCGTACTTGCGCGACGGCTTCGACGCCCACTCCAGGATCGCCTTCTC 76524
Query 33546 TTCCACCACGTTCAAGTCGTACAGCAGCT 33574
||||| | || ||||||||||||||
Sbjct 76525 CTCCACGATGTCGTTGTCGTACAGCAGCT 76553
Score = 93.3 bits (102), Expect = 3e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428
||||| | || ||| || | || | || |||||| ||||||||| ||||| || |||
Sbjct 103090 CCATCCAACAAGTCTTGCAGTTTGGCAGAATCGTGGCTGCCGTTGACAATGAAACGCTCG 103149
Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484
|| || | |||| ||| ||||| ||||||| |||||| ||||||||||| |||||
Sbjct 103150 TTCTTAAAGTCGAACTGGGTTTGGGCGCCCAACTCGCAACCGAAGTACTTCGTCGG 103205
>seq1459
Length=1092699
Score = 86.0 bits (94), Expect = 5e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 94121 TTCTTCTGGCCCATGCGGTGGATGCGGTCCTGCGCCTGCAGCTCGATCTGCGGGTTCCAA 94180
|||||||| |||| ||||| || | |||||||| ||| ||| | ||||||||||||
Sbjct 75856 TTCTTCTGCCCCACGCGGTATATTCTATCCTGCGCTTGCTCCTCCAGCTGCGGGTTCCAG 75797
Query 94181 TGCGGCTCCAACATAATTATGTGATTGCCGCCGGTTAAATTTAATCCCACGCCGCCG 94237
||||| ||||| | | | ||| ||| ||||| |||||| | || |||||||||
Sbjct 75796 TGCGGGTCCAAAAGGAGCAGGTGGTTGGCGCCGCATAAATTGAGACCTACGCCGCCG 75740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412804864967393
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |