Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1527 217 1e-51 seq1172 190 2e-43 seq1459 86.0 5e-12 >seq1527 Length=671880 Score = 217 bits (240), Expect = 1e-51 Identities = 544/812 (67%), Gaps = 27/812 (3%) Strand=Plus/Minus Query 28881 CATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAACGACGCCCTTAAA 28940 ||| || | ||||| ||| | || ||||| || || || ||| |||||||| | ||| Sbjct 504537 CATTTGCTGTACGGATTCATCCCAATTTGTGGAGGTGATGGGATCAACGACAGTTTGAAA 504478 Query 28941 ACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCCGTTCAGATTTTAAA 29000 || || ||||| |||| ||||||| ||||||| ||||| ||| || || Sbjct 504477 GAAATCGAAGGCAGTTTCCAAGCTTTGCAACGATCGTGCAGTGGCCGGGAAGACTTCAAG 504418 Query 29001 GTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGGGCGTGTCTGCGTGG 29060 ||| | |||||||| || |||||||| | || || || || ||||| ||||| | ||| Sbjct 504417 GTTTCGATTCACGACCCGTGGGCCGCTCTCCAGAAGCCACAGAAGGGATTGTCTTCATGG 504358 Query 29061 AACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATG--GCTGCCAAGTTGGCCAATCCAC 29118 ||||| || ||||||||||| || || ||| | ||| | || || || || || Sbjct 504357 AACGAACCTTACAAAGGCAACTTTGGACAGTTGATGATGTTG--AAACAAGCTAAACCCG 504300 Query 29119 ACATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCGA-CCCTTTTTATTTT--- 29174 |||| ||||| | || ||||| || || ||||| ||| | || ||||| || || | Sbjct 504299 ACATGAAAATCTTGCCTTCCATCGGTGGGTGGACTTTGGCTGATCCCTTCTTCTTCTTCA 504240 Query 29175 ATG-CACGACGCGGAGAAACGGCGCGTGTTTGTGGACTCGGTCGAGGAATTTTTGCAGGT 29233 || || | | |||| || | ||||| | || || |||| || | || Sbjct 504239 CTGACAAGTCTAAGAGAGACCG-----ATTTGTAGCTTCAGTGAAGGACTTCCTCGAGAC 504185 Query 29234 GTGGAAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGGGCGGTAAAGGCGCTAA 29293 ||||| || || ||||| || ||||| |||||||| || || ||||| ||||| || || Sbjct 504184 CTGGAAGTTCTTCGACGGTGTTGACATCGACTGGGAGTTCCCTGGCGGCAAAGGTGCCAA 504125 Query 29294 CCCGACACTTGGCA---ACGGGGAGCGCGACGCCGACACGTATAACATTTTACTGAAGGA 29350 ||| | ||||||| | ||| | || | | |||| | | ||| |||| || Sbjct 504124 CCCTAACCTTGGCAGTCCCAAGGATGGTGATG--TATACGTGTCGC---TTA-TGAAAGA 504071 Query 29351 ATTGCGCGCAATGCTGGATAAACTG-CAATTGCAAACGGGTAAAACGTATGAATTGACAA 29409 | | || | |||| || || | ||| || || |||| || || | ||||| |||| Sbjct 504070 ACTTCGTGAAATGTTGAATGAGCTGTCAGCTG-AAACTGGAAAGAAATATGAGCTGACTT 504012 Query 29410 GCGCAATCAGCTCTGGCCACGACAAAATTGCTGTAGTGAAATACGACGTTGTGCAAAAAT 29469 || |||||| | || |||||||| || ||||| ||| | | | || |||| Sbjct 504011 CAGCCATCAGCGCCGGTTGGGACAAAATCCAAGTGGTGAACTACAAAGAAGCCCAGAAAT 503952 Query 29470 TTCTTGATAAAATATTTCTAATGAGTTACGATTTTAAAGGCGCATGGTCAAACACCGATT 29529 | ||| | || || | |||||||| || || ||||| || ||||| ||| | || Sbjct 503951 ACATGGATCACATTTTCTTCATGAGTTATGACTTCAAAGGAGCCTGGTCGAACGACACTT 503892 Query 29530 TGGGATATCAAACTACACTCTACGCACCGAGTTGGAATCCCAACGAGCTTTACAACACTG 29589 |||| | || || |||| ||||| || ||||| || || ||| ||||| || | Sbjct 503891 TGGGCCACCAGACATCACTGTACGCGCCTGCGTGGAAACCAAAGGAGACTTACACGACAG 503832 Query 29590 ACCACGCCGTAAAGTCGCTCACTAAC-CAAGGCGTGGACCCGCGCAAAATTATTGTGGGC 29648 | || || || | || || | || |||||| ||||| || || || || ||| Sbjct 503831 ATTTCGGAGTTAAATACCT-GTTAGCTCAGGGCGTGAACCCGAAGAAGATAATAGTCGGC 503773 Query 29649 GTCGCCATGTACGGCCGCGGTTGGACGGGCGT 29680 || || ||||||||||| |||||||| || || Sbjct 503772 GTAGCTATGTACGGCCGTGGTTGGACAGGAGT 503741 >seq1172 Length=1933827 Score = 190 bits (210), Expect = 2e-43 Identities = 146/171 (85%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 |||| ||||||||| | ||||||||||| || |||||||||||||||||||| ||||| Sbjct 103883 CCAA-CGCCTTGGCCACCTCGGGCATGTTCACAATGACAGTCTTGATGCCGTTCCCCTTG 103941 Query 34561 CCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTG 34620 || || ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 103942 CCCTCCACCTTGGCGCAGATGCGCGGCATCTTGTAGCGGTAGAACGCGTCGGCCACATTG 104001 Query 34621 CGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTTACTTATAACTAACTA 34671 ||||| |||||||| | |||||| || || | || || ||||||| || Sbjct 104002 CGGTTCACGTTCACGGACCCCATGGT--TTGATACTAATTCTAACTAATTA 104050 Score = 159 bits (176), Expect = 3e-34 Identities = 152/196 (78%), Gaps = 9/196 (5%) Strand=Plus/Plus Query 33584 CGGCCACTTTGGGCAGCAGCGCCTGGTCCAAAACGCAcagcgcggtga---------gcg 33634 ||| ||| |||||||||||||| ||| || ||||||||||| ||| Sbjct 93054 CGGGCACCTTGGGCAGCAGCGCGGGGTGGTGCGCGGCCAGCGCGGTGACGGCGTGCAGCG 93113 Query 33635 cggcccgctgcgcgcgcagatcgccgcgcgtaaactgcagcagcagcgcgcggtacttgc 33694 |||| ||||| ||||| | ||| |||||| | | |||||||||||||||||| | | Sbjct 93114 CGGCGCGCTGTGCGCGGGGCTCGGCGCGCGCCAGCCGCAGCAGCAGCGCGCGGTGCCGCC 93173 Query 33695 gcACGTCCCCGGCGAACGCCGCCGGCCTCACCAGCACCTCGAACAGCACCAGCGGCGCCT 33754 |||||||| || | | || ||| |||| |||||||||||||||| |||||||||||||| Sbjct 93174 GCACGTCCGCGCCCAGCGACGCGGGCCGCACCAGCACCTCGAACGCCACCAGCGGCGCCT 93233 Query 33755 TCGACTTCACCTCCAG 33770 |||||||||||||||| Sbjct 93234 TCGACTTCACCTCCAG 93249 Score = 125 bits (138), Expect = 6e-24 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260 || |||||||| |||| ||| || ||||| |||||||| ||||| | | ||||| Sbjct 102413 GCAGGCGGGTTCTTCAATATAAACGTGTTCAGCTTATGGTTGAAGTCCAACTGCCCGTGG 102472 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320 |||||||| || ||||||||||| |||| |||| ||| | || || ||||| || Sbjct 102473 TAACCGCAAGCCTTGCAGCCCTGGGAGATGGTGTTGCGTTTGGTTGAAACTATGAGTTCC 102532 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAAC 34369 || ||||| ||||| |||||||| || | || |||||||||||||||| Sbjct 102533 GTTTCCGGATTGTCGCATTCCGGGCAGAGTACGAACTTGCGGATGAAAC 102581 Score = 113 bits (124), Expect = 4e-20 Identities = 116/149 (78%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 33427 TCCTCGGCCTGCTGCAGCCAGTCCAGGAAGGGCTGCGCGCGGCGCCGCACGTCCGCCATC 33486 |||||||| | | ||||||||||||||||||||||||||||||||||| || |||| | Sbjct 76406 TCCTCGGCGTCGTTGAGCCAGTCCAGGAAGGGCTGCGCGCGGCGCCGCACCTCGGCCACC 76465 Query 33487 TCCTCGCGGCTTAGCG-CTTTGCGGGACGGCTTGTAAAACCACTCCACGATCGCTTTCTT 33545 |||| || | ||| ||||| |||||||| | |||||||| |||||| |||| Sbjct 76466 ACCTCCTTGC-TGGCGTACTTGCGCGACGGCTTCGACGCCCACTCCAGGATCGCCTTCTC 76524 Query 33546 TTCCACCACGTTCAAGTCGTACAGCAGCT 33574 ||||| | || |||||||||||||| Sbjct 76525 CTCCACGATGTCGTTGTCGTACAGCAGCT 76553 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 ||||| | || ||| || | || | || |||||| ||||||||| ||||| || ||| Sbjct 103090 CCATCCAACAAGTCTTGCAGTTTGGCAGAATCGTGGCTGCCGTTGACAATGAAACGCTCG 103149 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || || | |||| ||| ||||| ||||||| |||||| ||||||||||| ||||| Sbjct 103150 TTCTTAAAGTCGAACTGGGTTTGGGCGCCCAACTCGCAACCGAAGTACTTCGTCGG 103205 >seq1459 Length=1092699 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 94121 TTCTTCTGGCCCATGCGGTGGATGCGGTCCTGCGCCTGCAGCTCGATCTGCGGGTTCCAA 94180 |||||||| |||| ||||| || | |||||||| ||| ||| | |||||||||||| Sbjct 75856 TTCTTCTGCCCCACGCGGTATATTCTATCCTGCGCTTGCTCCTCCAGCTGCGGGTTCCAG 75797 Query 94181 TGCGGCTCCAACATAATTATGTGATTGCCGCCGGTTAAATTTAATCCCACGCCGCCG 94237 ||||| ||||| | | | ||| ||| ||||| |||||| | || ||||||||| Sbjct 75796 TGCGGGTCCAAAAGGAGCAGGTGGTTGGCGCCGCATAAATTGAGACCTACGCCGCCG 75740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412804864967393