Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1705 168 1e-35 seq1346 123 4e-22 >seq1705 Length=26149 Score = 168 bits (186), Expect = 1e-35 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || |||||||||| |||| || || ||| ||| Sbjct 25056 TGTACTTGGTGACCGCCTTGGTGCCTTCACTGACGGCGTGCTTGGCGAGCTCACCGGGCA 24997 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | ||||| ||||| | ||| | | |||||| | |||||| | Sbjct 24996 GGAGAAGCCTCACGGAAGTCTGCACCTCCCTCGATGTGATCGTTGACCTCTTGTTGTAGT 24937 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||||| | |||| || |||| |||||||| || |||||||||| Sbjct 24936 GGGCCAGGCGGGAAGCCTCGGCGGCGATTCGCTCGAAGATGTCGTTCACGAACGAGTTCA 24877 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||||| ||| |||| || || ||| |||||||||||||| ||||| |||| Sbjct 24876 TGATGGACATCGCCTTGCTGGATATACCGGTGTCCGGGTGCACCTGCTTCAGCACTTTGT 24817 Query 1485710 AAA 1485712 ||| Sbjct 24816 AAA 24814 >seq1346 Length=947742 Score = 123 bits (136), Expect = 4e-22 Identities = 153/206 (74%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 794356 ATCAATTCGTTGCT-AAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 |||| ||| ||||| |||| | || || |||||||| || | |||||| ||||| ||||| Sbjct 445082 ATCAGTTCATTGCTGAAAGTA-AGCCCAGGCATGAGCCCCCTCTTCTTCAGCCAGAAGAT 445140 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 || | ||||||||||||||| |||||||| ||||| || ||||| | || | || || Sbjct 445141 GGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAGCCACAATTCGTTC 445200 Query 794475 GGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCCACTCTGCCTTTTTC 794532 |||| || ||| |||| || |||||||| || ||||| || ||||| ||| Sbjct 445201 TCCAAATGT-----GGCAGTCTTGCTGGCGATCCACTGCAATGCCCAGTCGGCCTTCTTC 445255 Query 794533 CTCACCGAGGGCACCGTGTCGATGGC 794558 |||| |||||| || || ||||| Sbjct 445256 TTCACGCAGGGCAGGGTCTCAATGGC 445281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915469759330139