Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1527 268 7e-67 seq1168 114 1e-20 seq1196 113 4e-20 seq1207 84.2 2e-11 >seq1527 Length=671880 Score = 268 bits (296), Expect = 7e-67 Identities = 593/878 (68%), Gaps = 15/878 (2%) Strand=Plus/Minus Query 29073 GCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTG 29132 || ||||| || || ||||| |||||| | || || || || ||| ||||| | Sbjct 504609 GCATATTTCGTCGAGTGGGGTGTATATCCGAGGAAGTTCCCAGTTGACCGTGTGCCAATC 504550 Query 29133 CCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAAC 29192 || || | | ||| || ||||||| ||||| || ||||| || || || ||| ||||| Sbjct 504549 CCGAATTTGACCCATTTGCTGTACGGATTCATCCCAATTTGTGGAGGTGATGGGATCAAC 504490 Query 29193 GACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGT 29252 ||| | ||| || |||||||| | || ||||||| || |||| ||||| Sbjct 504489 GACAGTTTGAAAGAAATCGAAGGCAGTTTCCAAGCTTTGCAACGATCGTGCAGTGGCCGG 504430 Query 29253 TCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGC 29312 ||| ||||| || | |||||||| ||||||||||| | || || || || ||||| Sbjct 504429 GAAGACTTCAAGGTTTCGATTCACGACCCGTGGGCCGCTCTCCAGAAGCCACAGAAGGGA 504370 Query 29313 GTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTG 29372 ||||| | |||||||| || |||||||| ||||| || ||| | ||| | || | Sbjct 504369 TTGTCTTCATGGAACGAACCTTACAAAGGCAACTTTGGACAGTTGATGATGTTGAAACAA 504310 Query 29373 GCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTC 29432 || || || || | ||||| |||| |||||||| || ||||| ||| | || || ||| Sbjct 504309 GCTAAACCCGACATGAAAATCTTGCCTTCCATCGGTGGGTGGACTTTGGCTGATCCCTTC 504250 Query 29433 TATTTCATGCAC-GACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATTTCT 29491 | ||| | ||| ||| | || | ||||| | || || | || || || Sbjct 504249 TTCTTC-TTCACTGACAAGTCTAAGAGAGACCGATTTGTAGCTTCAGTGAAGGACTTCCT 504191 Query 29492 GCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAAGG 29551 || |||||||| || ||||| || ||||| ||||||||||| || || |||||||| Sbjct 504190 CGAGACCTGGAAGTTCTTCGACGGTGTTGACATCGACTGGGAGTTCCCTGGCGGCAAAGG 504131 Query 29552 CGCCAACCCGACACTTGGCA---ACGGGGAGCGCGACGCCGACACGTATAACATTTTACT 29608 |||||||| | ||||||| | ||| | || | | |||| | | ||| | Sbjct 504130 TGCCAACCCTAACCTTGGCAGTCCCAAGGATGGTGATG--TATACGTGTCGC---TTA-T 504077 Query 29609 AAAGGAATTGCGCGCAATGATGGACGAG-TTACAATTGCAAACGGGCAAAACGTACGAGT 29667 || ||| | || | |||| || | ||| | || || |||| || || | || ||| Sbjct 504076 GAAAGAACTTCGTGAAATGTTGAATGAGCTGTCAGCTG-AAACTGGAAAGAAATATGAGC 504018 Query 29668 TGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGC 29727 |||| || ||||| |||| ||||| || || || || ||| | | || | Sbjct 504017 TGACTTCAGCCATCAGCGCCGGTTGGGACAAAATCCAAGTGGTGAACTACAAAGAAGCCC 503958 Query 29728 AAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACA 29787 | || | | ||| | || ||| ||||||| || || || ||||| || ||||| ||| Sbjct 503957 AGAAATACATGGATCACATTTTCTTCATGAGTTATGACTTCAAAGGAGCCTGGTCGAACG 503898 Query 29788 CCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGA-ACTGTAC 29846 | ||||||| |||| || | || |||||||| ||||| ||||| || ||| ||| Sbjct 503897 ACACTTTGGGCCACCAGACATCACTGTACGCGCCTGCGTGGAAACCAAAGGAGACT-TAC 503839 Query 29847 AACACGGACCACGCCGTTAAGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAATTATT 29906 | || || || ||||| | || ||||||||| ||||| || || || Sbjct 503838 ACGACAGATTTCGGAGTTAAATACCTGTTAGCTCAGGGCGTGAACCCGAAGAAGATAATA 503779 Query 29907 GTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGT 29944 || ||||| || ||||||||||| ||||||||||| || Sbjct 503778 GTCGGCGTAGCTATGTACGGCCGTGGTTGGACAGGAGT 503741 >seq1168 Length=7897672 Score = 114 bits (126), Expect = 1e-20 Identities = 318/484 (66%), Gaps = 19/484 (4%) Strand=Plus/Plus Query 103595 GACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAGATTATGCGCTGGGAGGAGGGCGACGAC 103654 |||||||| | || || ||||| ||||||||||||||| | ||| ||| |||||||| Sbjct 2386103 GACGAAGTTAGGTGTGCTTTTTGTAAAGTGGAGATTATGAGGTGGATGGAAGGCGACGAT 2386162 Query 103655 CCGGCTCGCGATCATCAGAGGTGGGCGCCGCAGTGTCCG---TTCCTGaaaaaaaCGGCT 103711 || || || |||||| |||||||||| || || ||| || | || || | Sbjct 2386163 CCAGCCAAAGACCATCAGCGGTGGGCGCCACAATGCCCGCTATTACGCAAGCAAGCCAGC 2386222 Query 103712 GCTGGCGCGCTGCCCGCCGGCCT-----TGCGATGGACGGGCAGGACGAGTGCGGCGTGA 103766 ||||| | | || || || | | | | || | ||||| ||||| | Sbjct 2386223 GCTGGGAACGTTCTCG--GGTCTACGACTTCCACCAATGGTCGCGACGAATGCGGTCTT- 2386279 Query 103767 GCGCGCTGCCGTCCACCAACGCCTGCGTGCGCATGCCCGGCCCCGCGCACCCTCGGTTCG 103826 ||| | | || | ||||||| ||| || | ||||| || || || | Sbjct 2386280 -CGCATTCCACTCG--CTACGCCTG-----GCAGACCTAGTCCCGCCCATCCGGAGTATG 2386331 Query 103827 CCTCCGAGGCCTCAAGGTTACAAACTTTTAAGGATTGGCCCCGGAGTCTGAAACAGAAAC 103886 || || || | || ||| || || || || ||||| || || || || || | Sbjct 2386332 CCAACGTCGCGGCCCGGCTACGTACGTTCAAAGACTGGCCGCGTAGCATGCCCCAAAAGC 2386391 Query 103887 CGGAGAAGATGGCCGAAGCCGGATTCTACTACACCGGCCACAGCGACAACACGAAATGCT 103946 |||| | | || |||||||| || || ||||||||||| ||||||| || || || | Sbjct 2386392 CGGAAGATTTAGCTGAAGCCGGTTTTTATTACACCGGCCAAGGCGACAAGACTAAGTGTT 2386451 Query 103947 TCTACTGCGACGGTGGTCTAAAGGATTGGGAGCACGATGATGAGCCGTGGCAACAACACG 104006 |||||| ||||| || || || |||||||| | || |||| |||||| | || |||| Sbjct 2386452 ACTACTGTGACGGAGGCCTGAAAGATTGGGAAAAAGACGATGTACCGTGGGAGCAGCACG 2386511 Query 104007 CGCTTTTCTTTCGCCGTTGCGCATACGTGCTACTTGTCAAGGGCCACGATTATGTACAAA 104066 | | || ||| |||||| || || ||||| || || | ||||||| || ||| Sbjct 2386512 CTCGTTGGTTTGACCGTTGTTATTATGTATACCTTGTTAAAGGACGCGATTATATAAAAA 2386571 Query 104067 AGGT 104070 |||| Sbjct 2386572 AGGT 2386575 >seq1196 Length=1288689 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || ||||| | || || || ||||| ||| | || ||| ||| Sbjct 730403 AATGCAGATCTTCGTAAAAACACTTACGGGGAAGACCATCACCCTTGAGGTGGAAGCTTC 730344 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || ||| || ||| ||||| ||||| | || ||| || Sbjct 730343 TGACACCATCGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCGGACCA 730284 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| ||||||| | || || ||||| ||||| || | | ||| || | |||||||| Sbjct 730283 GCAGCGACTTATCTTCGCTGGCAAACAACTGGAAGATGGCCGCACATTGTCAGACTACAA 730224 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAAT 107786 |||||||||||||| || |||||| ||||| | |||||| |||| || ||| Sbjct 730223 TATTCAAAAGGAGTCCACCTTGCACTTGGTGCTAAGATTGAGAGGAGGTAAT 730172 >seq1207 Length=6027761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| || || || || |||||||| ||| | ||| ||| | Sbjct 2998023 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAGCCATCA 2997964 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | || || || ||| || || |||||| | ||| || ||| Sbjct 2997963 GACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAG 2997904 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| || | || | || || || ||| |||| |||| || | | ||||||||| Sbjct 2997903 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACGCTTTCCGACTACAAC 2997844 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||||||||||||| | || | || || | ||| |||| |||| Sbjct 2997843 ATTCAAAAGGAGTCTACTCTACATTTAGTATTACGTTTGAGAGGTGGAA 2997795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398841307568389