Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq1527 268 7e-67
seq1168 114 1e-20
seq1196 113 4e-20
seq1207 84.2 2e-11
>seq1527
Length=671880
Score = 268 bits (296), Expect = 7e-67
Identities = 593/878 (68%), Gaps = 15/878 (2%)
Strand=Plus/Minus
Query 29073 GCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTG 29132
|| ||||| || || ||||| |||||| | || || || || ||| ||||| |
Sbjct 504609 GCATATTTCGTCGAGTGGGGTGTATATCCGAGGAAGTTCCCAGTTGACCGTGTGCCAATC 504550
Query 29133 CCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAAC 29192
|| || | | ||| || ||||||| ||||| || ||||| || || || ||| |||||
Sbjct 504549 CCGAATTTGACCCATTTGCTGTACGGATTCATCCCAATTTGTGGAGGTGATGGGATCAAC 504490
Query 29193 GACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGT 29252
||| | ||| || |||||||| | || ||||||| || |||| |||||
Sbjct 504489 GACAGTTTGAAAGAAATCGAAGGCAGTTTCCAAGCTTTGCAACGATCGTGCAGTGGCCGG 504430
Query 29253 TCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGC 29312
||| ||||| || | |||||||| ||||||||||| | || || || || |||||
Sbjct 504429 GAAGACTTCAAGGTTTCGATTCACGACCCGTGGGCCGCTCTCCAGAAGCCACAGAAGGGA 504370
Query 29313 GTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTG 29372
||||| | |||||||| || |||||||| ||||| || ||| | ||| | || |
Sbjct 504369 TTGTCTTCATGGAACGAACCTTACAAAGGCAACTTTGGACAGTTGATGATGTTGAAACAA 504310
Query 29373 GCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTC 29432
|| || || || | ||||| |||| |||||||| || ||||| ||| | || || |||
Sbjct 504309 GCTAAACCCGACATGAAAATCTTGCCTTCCATCGGTGGGTGGACTTTGGCTGATCCCTTC 504250
Query 29433 TATTTCATGCAC-GACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATTTCT 29491
| ||| | ||| ||| | || | ||||| | || || | || || ||
Sbjct 504249 TTCTTC-TTCACTGACAAGTCTAAGAGAGACCGATTTGTAGCTTCAGTGAAGGACTTCCT 504191
Query 29492 GCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAAGG 29551
|| |||||||| || ||||| || ||||| ||||||||||| || || ||||||||
Sbjct 504190 CGAGACCTGGAAGTTCTTCGACGGTGTTGACATCGACTGGGAGTTCCCTGGCGGCAAAGG 504131
Query 29552 CGCCAACCCGACACTTGGCA---ACGGGGAGCGCGACGCCGACACGTATAACATTTTACT 29608
|||||||| | ||||||| | ||| | || | | |||| | | ||| |
Sbjct 504130 TGCCAACCCTAACCTTGGCAGTCCCAAGGATGGTGATG--TATACGTGTCGC---TTA-T 504077
Query 29609 AAAGGAATTGCGCGCAATGATGGACGAG-TTACAATTGCAAACGGGCAAAACGTACGAGT 29667
|| ||| | || | |||| || | ||| | || || |||| || || | || |||
Sbjct 504076 GAAAGAACTTCGTGAAATGTTGAATGAGCTGTCAGCTG-AAACTGGAAAGAAATATGAGC 504018
Query 29668 TGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGC 29727
|||| || ||||| |||| ||||| || || || || ||| | | || |
Sbjct 504017 TGACTTCAGCCATCAGCGCCGGTTGGGACAAAATCCAAGTGGTGAACTACAAAGAAGCCC 503958
Query 29728 AAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACA 29787
| || | | ||| | || ||| ||||||| || || || ||||| || ||||| |||
Sbjct 503957 AGAAATACATGGATCACATTTTCTTCATGAGTTATGACTTCAAAGGAGCCTGGTCGAACG 503898
Query 29788 CCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGA-ACTGTAC 29846
| ||||||| |||| || | || |||||||| ||||| ||||| || ||| |||
Sbjct 503897 ACACTTTGGGCCACCAGACATCACTGTACGCGCCTGCGTGGAAACCAAAGGAGACT-TAC 503839
Query 29847 AACACGGACCACGCCGTTAAGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAATTATT 29906
| || || || ||||| | || ||||||||| ||||| || || ||
Sbjct 503838 ACGACAGATTTCGGAGTTAAATACCTGTTAGCTCAGGGCGTGAACCCGAAGAAGATAATA 503779
Query 29907 GTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGT 29944
|| ||||| || ||||||||||| ||||||||||| ||
Sbjct 503778 GTCGGCGTAGCTATGTACGGCCGTGGTTGGACAGGAGT 503741
>seq1168
Length=7897672
Score = 114 bits (126), Expect = 1e-20
Identities = 318/484 (66%), Gaps = 19/484 (4%)
Strand=Plus/Plus
Query 103595 GACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAGATTATGCGCTGGGAGGAGGGCGACGAC 103654
|||||||| | || || ||||| ||||||||||||||| | ||| ||| ||||||||
Sbjct 2386103 GACGAAGTTAGGTGTGCTTTTTGTAAAGTGGAGATTATGAGGTGGATGGAAGGCGACGAT 2386162
Query 103655 CCGGCTCGCGATCATCAGAGGTGGGCGCCGCAGTGTCCG---TTCCTGaaaaaaaCGGCT 103711
|| || || |||||| |||||||||| || || ||| || | || || |
Sbjct 2386163 CCAGCCAAAGACCATCAGCGGTGGGCGCCACAATGCCCGCTATTACGCAAGCAAGCCAGC 2386222
Query 103712 GCTGGCGCGCTGCCCGCCGGCCT-----TGCGATGGACGGGCAGGACGAGTGCGGCGTGA 103766
||||| | | || || || | | | | || | ||||| ||||| |
Sbjct 2386223 GCTGGGAACGTTCTCG--GGTCTACGACTTCCACCAATGGTCGCGACGAATGCGGTCTT- 2386279
Query 103767 GCGCGCTGCCGTCCACCAACGCCTGCGTGCGCATGCCCGGCCCCGCGCACCCTCGGTTCG 103826
||| | | || | ||||||| ||| || | ||||| || || || |
Sbjct 2386280 -CGCATTCCACTCG--CTACGCCTG-----GCAGACCTAGTCCCGCCCATCCGGAGTATG 2386331
Query 103827 CCTCCGAGGCCTCAAGGTTACAAACTTTTAAGGATTGGCCCCGGAGTCTGAAACAGAAAC 103886
|| || || | || ||| || || || || ||||| || || || || || |
Sbjct 2386332 CCAACGTCGCGGCCCGGCTACGTACGTTCAAAGACTGGCCGCGTAGCATGCCCCAAAAGC 2386391
Query 103887 CGGAGAAGATGGCCGAAGCCGGATTCTACTACACCGGCCACAGCGACAACACGAAATGCT 103946
|||| | | || |||||||| || || ||||||||||| ||||||| || || || |
Sbjct 2386392 CGGAAGATTTAGCTGAAGCCGGTTTTTATTACACCGGCCAAGGCGACAAGACTAAGTGTT 2386451
Query 103947 TCTACTGCGACGGTGGTCTAAAGGATTGGGAGCACGATGATGAGCCGTGGCAACAACACG 104006
|||||| ||||| || || || |||||||| | || |||| |||||| | || ||||
Sbjct 2386452 ACTACTGTGACGGAGGCCTGAAAGATTGGGAAAAAGACGATGTACCGTGGGAGCAGCACG 2386511
Query 104007 CGCTTTTCTTTCGCCGTTGCGCATACGTGCTACTTGTCAAGGGCCACGATTATGTACAAA 104066
| | || ||| |||||| || || ||||| || || | ||||||| || |||
Sbjct 2386512 CTCGTTGGTTTGACCGTTGTTATTATGTATACCTTGTTAAAGGACGCGATTATATAAAAA 2386571
Query 104067 AGGT 104070
||||
Sbjct 2386572 AGGT 2386575
>seq1196
Length=1288689
Score = 113 bits (124), Expect = 4e-20
Identities = 164/232 (71%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||| || || || ||||| | || || || ||||| ||| | || ||| |||
Sbjct 730403 AATGCAGATCTTCGTAAAAACACTTACGGGGAAGACCATCACCCTTGAGGTGGAAGCTTC 730344
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | || ||| || ||| ||||| ||||| | || ||| ||
Sbjct 730343 TGACACCATCGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCGGACCA 730284
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| ||||||| | || || ||||| ||||| || | | ||| || | ||||||||
Sbjct 730283 GCAGCGACTTATCTTCGCTGGCAAACAACTGGAAGATGGCCGCACATTGTCAGACTACAA 730224
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAAT 107786
|||||||||||||| || |||||| ||||| | |||||| |||| || |||
Sbjct 730223 TATTCAAAAGGAGTCCACCTTGCACTTGGTGCTAAGATTGAGAGGAGGTAAT 730172
>seq1207
Length=6027761
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||||||||| ||||| || || || || |||||||| ||| | ||| ||| |
Sbjct 2998023 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAGCCATCA 2997964
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| ||| ||| | || || || ||| || || |||||| | ||| || |||
Sbjct 2997963 GACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAG 2997904
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| || | || | || || || ||| |||| |||| || | | |||||||||
Sbjct 2997903 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACGCTTTCCGACTACAAC 2997844
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
||||||||||||||||| | || | || || | ||| |||| ||||
Sbjct 2997843 ATTCAAAAGGAGTCTACTCTACATTTAGTATTACGTTTGAGAGGTGGAA 2997795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398841307568389
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |