Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1207 109 9e-19 seq1196 100 4e-16 >seq1207 Length=6027761 Score = 109 bits (120), Expect = 9e-19 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || ||||| || |||||||| || || | || ||||| | || | Sbjct 2998022 TGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAGCCATCA- 2997964 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || ||||| ||||||| || |||||| ||| || ||||||||||| || || || Sbjct 2997963 GACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAG 2997904 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || || ||||| || || || || || | ||| | | || || || Sbjct 2997903 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACGCTTTCCGACTACAAC 2997844 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || ||||| || || ||| | |||||||||||||| || ||||| || Sbjct 2997843 ATTCAAAAGGAGTCTACTCTACATTTAGTATTACGTTTGAGAGGTGG 2997797 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || ||||| || |||||||| || || | || ||||| | || | Sbjct 2996456 TGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAGCCATCA- 2996398 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || ||||| ||||||| || |||||| ||| || ||||||||||| || || || Sbjct 2996397 GACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCTCCAGACCAG 2996338 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || || ||||| || || || || ||| | ||| | | ||||| ||| Sbjct 2996337 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGATGGACGCACGCTTTCCGATTACAAT 2996278 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTA 146240 || ||||| ||||| ||| | || || ||| Sbjct 2996277 ATTCAAAAGGAATCTACTCTTCACTTGGTA 2996248 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || ||||| || |||||||| |||||| | || ||||| | || | Sbjct 2997794 TGCAAATTTTCGTGAAGACATTGACGGGAAAAACTATTACTTTAGAAGTAGAGCCATCA- 2997736 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| |||| || || |||||| ||| || ||||||||||| || || || Sbjct 2997735 GACACTATTGAAAACGTGAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAG 2997676 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGA 146185 || || | || || ||||| || || || || || Sbjct 2997675 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGA 2997641 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || || || ||||| ||||| | || || |||| | Sbjct 3528205 TGCAGATTTTCGTTAAGACCTTGACTGGTAAAACCATTACATTGGAAGTTGAACCCTCTG 3528146 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||| |||||| ||||| ||| |||||||||||||| || ||||| | Sbjct 3528145 ATACAATCGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCGCCTGATCAGC 3528086 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || || || || ||||| || || || | | || | | || || |||| Sbjct 3528085 AGCGCCTGATCTTCGCTGGAAAACAGTTGGAAGACGGTCGCACCCTCTCCGACTACAATA 3528026 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| ||||| || Sbjct 3528025 TTCAAAAGGAATCAAC 3528010 >seq1196 Length=1288689 Score = 100 bits (110), Expect = 4e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| |||||||| | || || || || || || |||| || ||| | | Sbjct 730401 TGCAGATCTTCGTAAAAACACTTACGGGGAAGACCATCACCCTTGAGGTGGAAGCTTCTG 730342 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| ||||| ||| ||| ||||| || || || || || | Sbjct 730341 ACACCATCGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCGGACCAGC 730282 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || || || || |||||| | || ||| | || || |||| || |||| Sbjct 730281 AGCGACTTATCTTCGCTGGCAAACAACTGGAAGATGGCCGCACATTGTCAGACTACAATA 730222 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAAT 146266 | ||||| || || || | || || || || |||| ||||||||||| | ||| Sbjct 730221 TTCAAAAGGAGTCCACCTTGCACTTGGTGCTAAGATTGAGAGGAGGTAATTTAAT 730167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786094652488920