Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1251 214 4e-50 seq1327 123 6e-23 >seq1251 Length=5235866 Score = 214 bits (236), Expect = 4e-50 Identities = 442/653 (68%), Gaps = 11/653 (2%) Strand=Plus/Plus Query 110510 ACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGA 110569 ||| ||| |||| || |||||| | | || | ||||| ||||| || || ||||| Sbjct 3094754 ACAGTTGTCTTCATGTTTTCTTGTTGCTATGAGAGATGACAGCATTGAGGGGATATATGA 3094813 Query 110570 TGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCA 110629 || | ||| | |||| | || |||||| |||| || |||||| |||| || || Sbjct 3094814 CACTTTGAAACAGTGTGCTTTGATCTCTAAATCAGCTGGTGGTATTGGTGTTCATGTGCA 3094873 Query 110630 TGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGT 110689 ||| | | ||||| | | || || | | || |||| |||| ||| | || Sbjct 3094874 CTGCATTAGAGCCAAAGGCACCTACATTGCTGGAACAAATGGTGTCTCAAATGGTATAGT 3094933 Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAA 110749 || ||||| | || | ||| ||||||| | ||||||| | ||||| || || | | Sbjct 3094934 GCCTATGTTGCGTGTTTACAATAACACTGCCAGATATGTGGACCAAGGCGGCAATAAACG 3094993 Query 110750 T---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 ||| | || || | ||| | ||||| |||||| | |||||||| || || |||| Sbjct 3094994 GCCGGGCGCTTTCGCAGTGTATTTAGAACCCTGGCATGCTGATATATTCGAGTTTCTAGA 3095053 Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866 | || ||||| || || ||| | | ||| | || | ||||||||| |||| Sbjct 3095054 TTTAAAAAAGAATCATGGTAAAGAGGAAGTACGTGCAAGAGAACTCTTTTATGCACTGTG 3095113 Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 |||| |||||||||| |||||||||||| || |||||| ||| | ||||||| || Sbjct 3095114 GATTCCAGATTTATTTATGAAACGTGTTGAAAAAAATGAAGATTGGAGTATTATGTGCCC 3095173 Query 110927 TCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAA 110986 |||| |||||| ||| || | ||| | || |||||||||| | | || ||||| Sbjct 3095174 TCATGATTCTCCAGGTTTAGCCGATTGCTGGGGTGAAGAGTTTGAGGCTTTGTATGAAAA 3095233 Query 110987 ATATGAAAAAGAAGGCAAGTT-TCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAA- 111044 ||||||| | ||| | ||| | |||||| | ||| || ||| ||| ||| Sbjct 3095234 ATATGAACAGGAA-AAACGTTATGTGAAACAAGTCAAAGCACAGATACTGTGG---AAAG 3095289 Query 111045 --ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTA 111102 || ||||| ||||||| ||||||||||| || ||||| || || || ||| || Sbjct 3095290 CTATTATTGAAGCACAAGTAGAAACTGGAACACCATATATGTTATACAAGGATGCCTGTA 3095349 Query 111103 ATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 || | || |||||| | ||| |||| |||||||| | ||| || |||||| Sbjct 3095350 ATAGGAAGAGTAATCAGAAAAATCTAGGCACAATTAAATGTAGCAACTTGTGC 3095402 >seq1327 Length=2324893 Score = 123 bits (136), Expect = 6e-23 Identities = 144/193 (75%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||| ||| || |||||| ||| | |||||| |||| || |||| ||||||||| | Sbjct 1757873 CATCTGAGGGATGATGATTTGGTAATTTTCAATCGGCAGCCCACACTACATAAAATGAGT 1757932 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| ||| | ||| |||||| || | | | ||||| ||| | ||| | ||| Sbjct 1757933 ATGATGGGTCACAGAGTAAAAGTACTACCATGGTCCACATTCCGAATGAATCTGAGT--- 1757989 Query 305429 TGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| || || ||||| |||||||||||||||||||||||| | ||||| || ||| Sbjct 1757990 TGTACCTCACCATACAATGCCGATTTTGATGGAGATGAAATGAATTTACATGTGCCACAA 1758049 Query 305486 TCAAAGGTTACAA 305498 |||| || |||| Sbjct 1758050 TCAATGGAAACAA 1758062 Score = 123 bits (136), Expect = 6e-23 Identities = 144/193 (75%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||| ||| || |||||| ||| | |||||| |||| || |||| ||||||||| | Sbjct 1813246 CATCTGAGGGATGATGATTTGGTAATTTTCAATCGGCAGCCCACACTACATAAAATGAGT 1813305 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| ||| | ||| |||||| || | | | ||||| ||| | ||| | ||| Sbjct 1813306 ATGATGGGTCACAGAGTAAAAGTACTACCATGGTCCACATTCCGAATGAATCTGAGT--- 1813362 Query 305429 TGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| || || ||||| |||||||||||||||||||||||| | ||||| || ||| Sbjct 1813363 TGTACCTCACCATACAATGCTGATTTTGATGGAGATGAAATGAATTTACATGTGCCACAA 1813422 Query 305486 TCAAAGGTTACAA 305498 |||| || |||| Sbjct 1813423 TCAATGGAAACAA 1813435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186701780709261