Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1168 107 2e-18 seq1889 96.9 3e-15 seq1207 96.9 3e-15 >seq1168 Length=7897672 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 99911 GATTGGCCGCTCAGTTTGAAACAAAAACCAGAGCAATTGGCCGAAGCCGGTTTTTATTAC 99970 || ||||||| || || ||||| || || | || || |||||||||||||||||| Sbjct 2386364 GACTGGCCGCGTAGCATGCCCCAAAAGCCGGAAGATTTAGCTGAAGCCGGTTTTTATTAC 2386423 Query 99971 ACCGGCAAAGGTGACAAAGTTAAATGTTTTCATTGCGACGGCGGCCTCAAAGACTGGGAA 100030 |||||| |||| ||||| ||| |||| | || ||||| ||||| ||||| |||||| Sbjct 2386424 ACCGGCCAAGGCGACAAGACTAAGTGTTACTACTGTGACGGAGGCCTGAAAGATTGGGAA 2386483 Query 100031 AGCACCGACGAGCCGTGGCATGAACACGCACGTTGGTTTGATCGCTG 100077 | ||| | |||||| | | ||||| ||||||||||| || || Sbjct 2386484 AAAGACGATGTACCGTGGGAGCAGCACGCTCGTTGGTTTGACCGTTG 2386530 Score = 98.7 bits (108), Expect = 8e-16 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 99587 ACATACGTCAACTGGCCTGTGTCTTTTTTGGAACCAAGTCAAATGGCCGCCAACGGGTTT 99646 |||| |||||| |||||||| | ||| | |||| || | || |||||| ||| Sbjct 2386025 ACATTCGTCAATTGGCCTGTCCCATTTCTATCACCACTAAAACTAGCTCGCAACGGTTTT 2386084 Query 99647 TATTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTTTGCAAAGTTGAAATAATGCGC 99706 ||||||||||| |||||||| | || || ||||| ||||| || || ||| | Sbjct 2386085 TATTATTTGGGAAAAAATGACGAAGTTAGGTGTGCTTTTTGTAAAGTGGAGATTATGAGG 2386144 Query 99707 TGGTTGGAGGGCGACGACCCGGCTGCAGATCATAAACGATGGGCGCCGCAATGCCCG 99763 ||| |||| |||||||| || || ||| ||| | || |||||||| ||||||||| Sbjct 2386145 TGGATGGAAGGCGACGATCCAGCCAAAGACCATCAGCGGTGGGCGCCACAATGCCCG 2386201 >seq1889 Length=140810 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 ||||||||| || ||||| || |||||||| || ||||| |||||| ||||| ||| || Sbjct 27459 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 27518 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 ||| || ||| | || ||| || ||| || ||||| || | || ||| Sbjct 27519 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 27578 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATT--CTAAAACTATGGGCGAT 106433 ||| || | || || | || ||||| || || ||||| | | ||||| |||| Sbjct 27579 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTATC--CGAT 27636 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||||| || || ||||||||||| || ||||| |||||| Sbjct 27637 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTG 27675 >seq1207 Length=6027761 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 ||||||||| || ||||| || |||||||| || ||||| |||||| ||||| ||| || Sbjct 2996689 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 2996630 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 ||| || ||| | || ||| || ||| || ||||| || | || ||| Sbjct 2996629 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 2996570 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATT--CTAAAACTATGGGCGAT 106433 ||| || | || || | || ||||| || || ||||| | | ||||| |||| Sbjct 2996569 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTATC--CGAT 2996512 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||||| || || ||||||||||| || ||||| |||||| Sbjct 2996511 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTG 2996473 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 ||||||||| || ||||| || |||||||| || ||||| |||||| ||||| ||| || Sbjct 2998255 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 2998196 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 ||| || ||| | || ||| || ||| || ||||| || | || ||| Sbjct 2998195 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 2998136 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATT--CTAAAACTATGGGCGAT 106433 ||| || | || || | || ||||| || || ||||| | | ||||| |||| Sbjct 2998135 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTATC--CGAT 2998078 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||||| || || ||||||||||| || ||||| |||||| Sbjct 2998077 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTG 2998039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402293800335008