Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1705 131 2e-24 seq1346 113 6e-19 seq1220 91.5 2e-12 >seq1705 Length=26149 Score = 131 bits (144), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||||| |||||||||||||| |||| | || |||| |||| | Sbjct 24813 ATTTACAAAGTGCTGAAGCAGGTGCACCCGGACACCGGT-----ATA-TCCAGCAAGGCG 24866 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| || |||| | ||||||| Sbjct 24867 ATGTCCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGAATCGCCGCCGAGGCTTCC 24926 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | || ||||||| | |||||| || | ||| | ||||| ||||| Sbjct 24927 CGCCTGGCCCACTACAACAAGAGGTCAACGATCACATCGAGGGAGGTGCAGACTTCCGTG 24986 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || ||| ||| || || |||| |||||||||| || ||||||| Sbjct 24987 AGGCTTCTCCTGCCCGGTGAGCTCGCCAAGCACGCCGTCAGTGAAGGCACCA 25038 >seq1346 Length=947742 Score = 113 bits (124), Expect = 6e-19 Identities = 148/199 (74%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAAC 1456155 ||||| || || |||| | |||| ||| |||||||||||||| || |||||||| | Sbjct 445281 GCCATTGAGACCCTGCCCTGCGTGAAGAAGAAGGCCGACTGGGCATTGCAGTGGATCGCC 445222 Query 1456156 AAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCT 1456214 | | | | | | ||| |||| || || | || | ||||| || ||||| ||||||| Sbjct 445221 A-GCAAGACTGCCACA-TTTGGAGAACGAATTGTGGCTTTTGCAGCAGTCGAAGGCATCT 445164 Query 1456215 TTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTC 1456274 | ||||||||||||||| ||||||| ||||| |||||| | || |||||||| || | Sbjct 445163 TCTTCTCGGGCAGTTTCGCTTCCATCTTCTGGCTGAAGAAGAGGGGGCTCATGCCTGGGC 445104 Query 1456275 TT-CTGCTTTAGCAACGAA 1456292 || || || ||||| ||| Sbjct 445103 TTACT--TTCAGCAATGAA 445087 Score = 91.5 bits (100), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 1455855 TGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 |||| || |||| ||| ||| || ||||||||||| || || || || ||||| ||| Sbjct 446464 TGGGATTCACTGAAAGACTGCGAACGACATTTCATCAAACATGTGCTTGCATTTTT-CGC 446406 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 || ||||| || || || ||||| | | | || ||||||||||| | Sbjct 446405 AGCGTCAGATGGAATAGTCAATGAAAACCTAGTAGAAAGATTCTCACAAGAGGTCCAAGT 446346 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | |||| || | || ||||| ||||||||||| || || ||||| | || ||||| | Sbjct 446345 GACAGAAGCTAGATTTTTTTATGGGTTCCAGATTGCTATGGAAAATGTACATTCTGAGAT 446286 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 ||||| | || || ||||| || ||| ||||||| Sbjct 446285 GTACTCCTTACTTATTGACACATATATCAGGGACCCG 446249 >seq1220 Length=2478420 Score = 91.5 bits (100), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 2133536 CGCCCTCTTTGACGAGGCGTCGGACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTC 2133595 |||| | |||||||| | | |||||||||||| |||| ||||| || | ||||| Sbjct 745770 CGCCATATTTGACGAAGACACAGACGAGATGGTGGTGGTGAAGGATATAGAGATGTTCTC 745829 Query 2133596 CATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGC 2133655 ||||||||||||||| ||| | |||||| ||| |||| | | || ||||| || Sbjct 745830 CATGTGCGAGCACCATCTGGTACCCTTTTACGGGAAGGTATCCATTGGGTACCTTCCGCA 745889 Query 2133656 GGGCAAGATCATCGGTCTGAGCAAG 2133680 ||||||||| | || || |||||| Sbjct 745890 AGGCAAGATCTTGGGGCTCAGCAAG 745914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177107005130762