Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1207 114 1e-20 seq1196 104 2e-17 seq1889 96.9 3e-15 >seq1207 Length=6027761 Score = 114 bits (126), Expect = 1e-20 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 || |||||||||||| | | | ||||| || || || || ||||| |||||||| Sbjct 3525237 TTAATTTCCACCACGAAGACGGAGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTA 3525296 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 ||| | | ||| || |||| |||| || ||||| || || |||| ||||| ||||| Sbjct 3525297 ATCAGAGAGGGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTC 3525356 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCG 35681 | ||| | | |||||||||| ||| ||| || || | | || | | ||||| | Sbjct 3525357 TGGAGGGATACCCTCCTTGTCC-TGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATG 3525415 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | || || |||||||| || ||||||||||||||||||||||| Sbjct 3525416 GCTCAACTTCTAAAGTTATAGTTTTACCAGTTAAAGTTTTCACAAATATCTGCAT 3525470 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | || | || || ||||||| ||| |||||||||||||||||| |||| Sbjct 2997795 TTCCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGG 2997854 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || |||| |||| |||||| || || || ||||| ||||||||||| | | Sbjct 2997855 AAAGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGG 2997914 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| || ||||||| | ||| ||| | ||| | | || | | ||||| | || Sbjct 2997915 GAATGCCTTCCTTGT-CTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCT 2997973 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | ||||| ||||| || ||||| || || || || || ||||| Sbjct 2997974 ACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | |||||| || | || |||| ||||| || ||||| Sbjct 3527103 CTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAA 3527162 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||| ||||||||||| | |||| | ||| |||||| ||| ||| || || | | Sbjct 3527163 GATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCC-TGAATTTTAGCTTTAACAT 3527221 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| | ||| || || | ||||| ||||| || || | |||||| | Sbjct 3527222 TTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGGTTTTTCCAGTGAGAGTTTTGA 3527281 Query 35724 CAAATATCTGCAT 35736 | ||||||||||| Sbjct 3527282 CGAATATCTGCAT 3527294 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | || ||||| || | ||| ||||||||||| |||||||||| Sbjct 2996230 TCCACCACGAAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCGGA 2996289 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | || || | || |||| |||||| || || || ||||| ||||||||||| | ||| Sbjct 2996290 AAGCGTGCGTCCATCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGAGG 2996349 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 || || ||||||| | ||| ||| | ||| | | || | | ||||| | || | Sbjct 2996350 AATGCCTTCCTTGT-CTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTA 2996408 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | ||||| ||||| || ||||| || || || || || ||||| Sbjct 2996409 CTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2996457 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| || || | |||||| || | || |||| ||||| || ||||| Sbjct 3525963 CTCCTTCTGGATGTTATAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAA 3526022 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||| ||||||||||| | |||| | ||| |||||| ||| ||| || || | | Sbjct 3526023 GATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCC-TGAATTTTAGCTTTGACAT 3526081 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| | ||| || || | ||||| ||||| || || | |||||| | Sbjct 3526082 TTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGGTTTTTCCAGTGAGAGTTTTGA 3526141 Query 35724 CAAATATCTGCAT 35736 | ||||||||||| Sbjct 3526142 CGAATATCTGCAT 3526154 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | |||||| || | || |||| ||||| || ||||| Sbjct 3527787 CTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAA 3527846 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||| ||||||||||| | |||| | ||| |||||| ||| |||||| || | | Sbjct 3527847 GATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCC-TGAATTTTTGCTTTGACAT 3527905 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| | ||||| || | ||||| ||||| || || | |||||| | Sbjct 3527906 TCTCAATGGTGTCTGAAGGCTCCACTTCAAGTGTGATGGTTTTCCCAGTGAGAGTTTTTA 3527965 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 3527966 CGAAGATCTGCAT 3527978 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||| | ||| || || ||||| |||||||||| Sbjct 2996459 CCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGAT 2996518 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| |||||| || || || |||| |||||||| || | ||| Sbjct 2996519 AGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGG 2996578 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| || || ||||| || | | || | | || || | || || Sbjct 2996579 ATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACT 2996638 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||| || || || ||||||||||| || |||||||| ||||||||| Sbjct 2996639 TCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATT 2996686 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||| | ||| || || ||||| |||||||||| Sbjct 2998025 CCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGAT 2998084 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| |||||| || || || |||| |||||||| || | ||| Sbjct 2998085 AGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGG 2998144 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| || || ||||| || | | || | | || || | || || Sbjct 2998145 ATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACT 2998204 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||| || || || ||||||||||| || |||||||| ||||||||| Sbjct 2998205 TCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATT 2998252 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | || |||||| || | || ||||||||| || || || || | Sbjct 3525700 CCACCACGCAAGCGCAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTATAGTCTGAG 3525759 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||| || || || ||||| ||||||||||| | ||| Sbjct 3525760 AGAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 3525819 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| |||||| ||| ||| || || | | | | | ||||| | |||||| Sbjct 3525820 ATTCCCTCTTTGTCC-TGAATTTTAGCTTTAACATTCTCGATGGTGTCAGAAGGTTCCAC 3525878 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| || || | || || ||||| |||||||| Sbjct 3525879 TTCAAGTGTGATGGTTTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3525926 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || | || ||||||||||| ||||| |||| Sbjct 3527980 CCACCACGGAGACGCAGCACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGAG 3528039 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| |||| ||| || || || || |||| |||||||| || | ||| Sbjct 3528040 AGGGTGCGACCGTCTTCCAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGA 3528099 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || || ||||| ||| ||| || || | || | | || || | ||| || Sbjct 3528100 ATGCCTTCTTTGTCTTGGAT-TTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAAC 3528158 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 |||| || || |||||||| ||||| || || || || ||||||||| ||| Sbjct 3528159 TTCCAATGTAATGGTTTTACCAGTCAAGGTCTTAACGAAAATCTGCATTTTGT 3528211 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||||||||| || | || |||||||| ||||| || || | Sbjct 3526156 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAGTCTGAG 3526215 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||| || ||||| ||||| ||||||||||| | ||| Sbjct 3526216 AGAGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 3526275 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| || ||| ||||| || | | | | | ||||| | || || Sbjct 3526276 ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTCTCAATGGTGTCAGAAGGCTCAACT 3526335 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| || || | |||||| || || |||||||| Sbjct 3526336 TCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCAT 3526382 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||||||||| || | || ||||| || ||||| || || | Sbjct 3527296 CCACCACGCAGACGCAACACCAAGTGAAGAGTCGATTCCTTCTGGATGTTATAGTCTGAG 3527355 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||| || ||||| ||||| ||||||||||| | ||| Sbjct 3527356 AGAGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 3527415 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| || ||| ||||| || | | || | | ||||| | || || Sbjct 3527416 ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGAAGGCTCAACT 3527475 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| || || | |||||| || || |||||||| Sbjct 3527476 TCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCAT 3527522 >seq1196 Length=1288689 Score = 104 bits (114), Expect = 2e-17 Identities = 168/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 ||| || || | || || | |||||| || || || |||||||||||| ||||| || Sbjct 730172 ATTACCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTC 730231 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | ||| || || | || ||||| || || || || || || | ||||||||||||| Sbjct 730232 TGACAATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGG 730291 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATT 35684 ||| | | ||||| | | ||| ||| || |||| | || | | ||||| | || Sbjct 730292 AGGGATACCTTCCTTAT-CTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTT 730350 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGC 35743 ||||||| | ||||| || || ||||| | ||||| || || ||||||||| || || Sbjct 730351 CCACCTCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCATTGTGAGC 730409 >seq1889 Length=140810 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||| | ||| || || ||||| |||||||||| Sbjct 27689 CCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGAT 27630 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| |||||| || || || |||| |||||||| || | ||| Sbjct 27629 AGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGG 27570 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| || || ||||| || | | || | | || || | || || Sbjct 27569 ATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACT 27510 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||| || || || ||||||||||| || |||||||| ||||||||| Sbjct 27509 TCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATT 27462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450752459449080