Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1251 666 0.0 seq1346 116 5e-21 >seq1251 Length=5235866 Score = 666 bits (738), Expect = 0.0 Identities = 1232/1780 (69%), Gaps = 38/1780 (2%) Strand=Plus/Minus Query 68364 CTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACC 68423 |||||||| |||||| ||||| | || || || ||||| |||||||| ||||| || Sbjct 3096377 CTTATCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTTGTTCGTAGATAATACATTCC 3096318 Query 68424 GGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGG 68483 ||||| ||||| | |||| | || || || ||| |||||||| |||| |||| Sbjct 3096317 AGTTTTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTGG 3096258 Query 68484 ATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGC 68543 || |||| ||| ||||| | || || |||||||| ||||| || ||||| |||||||| Sbjct 3096257 CTCAGCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCGC 3096198 Query 68544 CATTTTTATAATACTCTTTTGA--GGAATTTCCCAAATAGTCTT--AAAAATCTGTTTGA 68599 ||||| || || | ||||| | ||| ||||||| ||| || | || ||| || | Sbjct 3096197 CATTTGAATGGTAGT--TTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTT--A 3096142 Query 68600 TATCATCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCT 68656 |||| | |||| | | |||||||||| |||||| || ||||| | ||| | Sbjct 3096141 TATCTTTGGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGAATAATGAGATTTT 3096082 Query 68657 TGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTA 68716 | || || |||| ||| | | || |||||| | | | | || |||| || | Sbjct 3096081 TCATATCTTCATCCCATAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACAA 3096022 Query 68717 TTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAG 68776 ||| ||||| || ||||| || | | |||||||||| || | || || | || Sbjct 3096021 CTTGGAATTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAAG 3095962 Query 68777 ATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAAC 68836 ||||||| ||||| || ||||| || ||||| ||||| |||||||| || || | || Sbjct 3095961 ATTCATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGTG 3095902 Query 68837 TATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTT-CCAATCCCAAAGATCA 68895 ||| | ||| |||||| || ||||| ||||| | ||| | ||| ||||| || || Sbjct 3095901 AATTGCGAAGTCCATGTTTTGCAATTTTGTCTTTCA-ATGCCTGCCAGTCCCAGAGGTCT 3095843 Query 68896 GATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTA 68955 | ||| ||||| | || ||||||| || || | ||| || |||| | Sbjct 3095842 GTTGGAGTTTTGTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACTACCATGA 3095783 Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 ||||| ||||| || | | ||| || | |||||||||||||||||| || |||||| Sbjct 3095782 TATGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAA 3095723 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 ||||| ||||| || || | | || || | || | ||| || |||| | Sbjct 3095722 TAAATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTCACTTTCATATGGT--A 3095665 Query 69076 TGTAAAAGAATA--AATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTC 69133 || | |||| |||| |||||| ||||| || || || || || |||||||| || | Sbjct 3095664 TGCGCATTAATACAAATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCTGTGCC 3095605 Query 69134 TCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAA 69193 || ||||||| ||| ||||| || | ||||| ||||| | ||| ||||||||||| | Sbjct 3095604 TCATATTTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATAATTTTATTTA 3095545 Query 69194 GATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATC--AAATCGTC-CAT 69250 |||| || |||| || || || || |||||| ||| | || | | ||| Sbjct 3095544 GATTCTGGGTAACTATCTTTGTGACCTCTTTAAGTTTGGTAAAGTTGTAAGTTTTGTCAT 3095485 Query 69251 CTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAAT 69310 | | |||||||| |||| || | |||||||| |||||||||||| |||| | | Sbjct 3095484 CATTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGTTTCATCTGCAG 3095425 Query 69311 TTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCT 69370 || ||| | | || ||||| || | || |||||||| || || || ||||||| || Sbjct 3095424 ATGTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCCTAGATTTTTCT 3095365 Query 69371 GATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCT 69430 |||||||||| | |||||||| |||||||| | ||| | || || |||||||| | | Sbjct 3095364 GATTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCCAGTTTCTACTT 3095305 Query 69431 GAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCT 69490 | | ||| ||||||| |||||| | | | || || | | || ||||| || | Sbjct 3095304 GTGCTTCAATAATAGCTTTCCACAGTATCTGTGCTTTGACTTGTTTCACATAACGTTTTT 3095245 Query 69491 CTTTTTCATATTGTGTATATA--GCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 | | |||||||| | ||| | ||| || || || || ||||| ||| | || || Sbjct 3095244 CCTGTTCATATTTTTCATACAAAGCC--TCAAACTCTTCACCCCAGCAATCGGCTAAACC 3095187 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTTCAT 69605 ||| | |||| || ||||| ||| || || ||| |||| || ||| |||||||| Sbjct 3095186 TGGAGAATCATGAGGGCACAT-AAT-ACTCCA-ATCTTCATTTTTTTCAACACGTTTCAT 3095130 Query 69606 AAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 ||||| ||| |||||||| || || |||||| ||||| | | ||| || || || Sbjct 3095129 AAATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTACTTCCTCTTTACC 3095070 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 ||| ||||| | ||| |||||||| | ||||||| |||||| ||||||| ||| | Sbjct 3095069 ATGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGGGTTCTAAATACAC 3095010 Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785 || | | ||||| |||||||| || || || || | ||||||||||||||||| || Sbjct 3095009 TGCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGGCAGTGTTATTGTA 3094950 Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845 || | || ||| || | |||||||| || |||||||||||||| ||| || | || Sbjct 3094949 AACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAGCAATGTAGGTGCC 3094890 Query 69846 TCTTGCGCGAAT--ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 | | || | ||| | | | || || | ||| || || || || ||||||||| | | Sbjct 3094889 TTTGGCTCTAATGCAGTGCACAT-GA-ACACCAATACCACCAGCTGATTTAGAGATCAAA 3094832 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 ||||| ||||||| ||||||||||| ||||| ||||| |||||| |||| || |||| Sbjct 3094831 GCACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCATAGCAACAAGA 3094772 Query 69964 AAACAGCTAGACATTTGATGATGTA-TAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 ||||| ||||| || || | || || | ||| ||| | || ||| || || Sbjct 3094771 AAACATGAAGACAACTG-TGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTGGACTCGCATG 3094713 Query 70023 AGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACT 70081 |||||| |||| ||||| | | ||||||||| | ||| || | || | ||| ||| Sbjct 3094712 AGTGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAACATCTTCAC- 3094654 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 ||| ||||| || | || | ||| ||||||||||| || Sbjct 3094653 CATGTATTCCGATAGAAACTCTCATTAACATATGCTGCGG 3094614 >seq1346 Length=947742 Score = 116 bits (128), Expect = 5e-21 Identities = 161/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||| ||| | ||| || || || || |||||||| || || | ||| | Sbjct 445068 CCTCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTTCT 445127 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || |||| ||| ||| || || |||||||||||||| ||||||||||| | Sbjct 445128 TCAGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAG 445187 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTA-TCATTATG--TATCCACTTCTGTGCCCAATCAG 39815 | |||| || ||||| | | | | || | || ||||||| | |||||| || | Sbjct 445188 CCACAATTCGTTCTCCAAATGTGGCAGTCTTGCTGGCGATCCACTGCAATGCCCAGTCGG 445247 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | |||||||| || || |||| || || || ||||| || || Sbjct 445248 CCTTCTTCTTCACGCAGGGCAGGGTCTCAATGGCATTGAACAG 445290 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||| || ||||| | ||||| || || ||||| || || |||||| |||| ||||| Sbjct 446283 TACATCTCAGAATGTACATTTTCCATAGCAATCTGGAACCCATAAAAAAATCTAGCTTCT 446342 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 || | ||| |||||| | |||||||| | | |||||||| ||||||||||| Sbjct 446343 GTCACTTGGACCTCTTGTGAGAATCTTTCTACTAGGTTTTCATTGACTATTCCATCTGAC 446402 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAAT 40061 || || |||||||| | |||||||| || |||| Sbjct 446403 GCTGCGAAAAATGCAAGCACATGTTTGATGAAAT 446436 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 ||||||| ||| |||||||| | |||||||| || ||||||||||| || ||||| ||| Sbjct 446683 TTTGATAAATCCACTTCTTCCACCGTCCAAAATGATGCCTCTGCCTTCTTATACATTTTC 446742 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATC 40199 ||||| || |||| || || || || || ||||||| Sbjct 446743 CATATGTCGGGATACTGAATGGGGAATATTACAAATC 446779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686846110985640