Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1207 140 2e-28 seq1168 125 4e-24 seq1196 89.7 3e-13 >seq1207 Length=6027761 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || | ||| || ||||| ||||| ||||| || Sbjct 3525244 CCACCACGAAGACGGAGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAG 3525303 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||||||||| || || || | |||||||||||| || || Sbjct 3525304 AGGGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGG 3525363 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| ||| | |||||| | ||||||||| ||| || Sbjct 3525364 ATACCCTCCTTGTC-CTGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAAC 3525422 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | ||||| |||||||| ||||| ||||||||||| ||||||||| Sbjct 3525423 TTCTAAAGTTATAGTTTTACCAGTTAAAGTTTTCACAAATATCTGCATG 3525471 Score = 118 bits (130), Expect = 7e-22 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| || || ||||| ||||| ||||||||||||||| || || ||| Sbjct 2997797 CCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAA 2997856 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | || || || || || || || ||||| ||||| || || Sbjct 2997857 AGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGA 2997916 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT--TCGCTCTCC 34656 | || ||||||||| ||| ||| | ||||| | || |||||| | ||||| Sbjct 2997917 ATGCCTTCCTTGTCT-TGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCT-- 2997973 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| || ||||| ||||| || || || || ||||| ||||| Sbjct 2997974 ACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | || | ||||||||| |||||| || ||||| || || || Sbjct 3526383 GCCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3526442 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| | ||| || || ||||| || |||||||||||||| || || Sbjct 3526443 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 3526502 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| ||| ||| | ||| || | ||||||||| |||| Sbjct 3526503 GATGCCTTCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCA 3526561 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || || || || || | || || ||||||||||||||| Sbjct 3526562 CTTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3526611 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | || | ||||||||| |||||| || ||||| || || || Sbjct 3527523 GCCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3527582 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| | ||| || || ||||| || |||||||||||||| || || Sbjct 3527583 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 3527642 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| ||| ||| | ||| || | ||||||||| |||| Sbjct 3527643 GATGCCTTCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCA 3527701 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || || || || || | || || ||||||||||||||| Sbjct 3527702 CTTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3527751 Score = 109 bits (120), Expect = 3e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 2996231 CCACCACGAAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCGGAA 2996290 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || || || || || || || ||||| ||||| || || Sbjct 2996291 AGCGTGCGTCCATCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGAGGA 2996350 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT--TCGCTCTCC 34656 | || ||||||||| ||| ||| | ||||| | || |||||| | ||||| Sbjct 2996351 ATGCCTTCCTTGTCT-TGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCT-- 2996407 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| || ||||| ||||| || || || || ||||| ||||| Sbjct 2996408 ACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2996457 Score = 107 bits (118), Expect = 1e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || ||||| ||||| || |||||||| ||||| || || || Sbjct 3527305 AGACGCAACACCAAGTGAAGAGTCGATTCCTTCTGGATGTTATAGTCTGAGAGAGTGCGA 3527364 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || |||||||| || |||||||| ||||| || || | |||||| Sbjct 3527365 CCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCT 3527424 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 || || ||||| ||| | | ||| ||||| ||| ||||| | || Sbjct 3527425 TTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGAAGGCTCAACTTCAAGTGTG 3527484 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || | ||||| || || ||||||||| Sbjct 3527485 ATAGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCATG 3527523 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || || |||||||| |||||||| ||||| || || || Sbjct 3526165 AGACGCAACACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAGTCTGAGAGAGTGCGA 3526224 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || |||||||| || |||||||| ||||| || || | |||||| Sbjct 3526225 CCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCT 3526284 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| || | ||| || | ||| ||||| ||| ||||| | || Sbjct 3526285 TTATC-CTGAATCTTAGCTTTGACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGTGT 3526343 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || | ||||| || || ||||||||| Sbjct 3526344 GATAGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCATG 3526383 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||||||||| |||||| || ||||| || || || | || || Sbjct 3526621 AGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGG 3526680 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || || ||||| || |||||||||||||| || || | || ||| Sbjct 3526681 CCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCC 3526740 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| || | ||||||||| |||||||| | ||| Sbjct 3526741 TTGTCTTGGAT-TTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGT 3526799 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || ||||||||||||||| Sbjct 3526800 GATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3526839 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||||||||| |||||| || ||||| || || || | || || Sbjct 3526849 AGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGG 3526908 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || || ||||| || |||||||||||||| || || | || ||| Sbjct 3526909 CCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCC 3526968 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| || | ||||||||| |||||||| | ||| Sbjct 3526969 TTGTCTTGGAT-TTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGT 3527027 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || ||||||||||||||| Sbjct 3527028 GATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3527067 Score = 102 bits (112), Expect = 5e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| || || || ||||||||||| || || || || || || || Sbjct 3527989 AGACGCAGCACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGA 3528048 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||||| || || || || | ||||| || || ||||| | || || Sbjct 3528049 CCGTCTTCCAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGAATGCCTTCT 3528108 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| ||| | ||||| || | || ||||||| || Sbjct 3528109 TTGTCTTGGAT-TTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAACTTCCAATGT 3528167 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || |||||||| || || || || || ||||||||||| ||| Sbjct 3528168 AATGGTTTTACCAGTCAAGGTCTTAACGAAAATCTGCATTTTG 3528210 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 |||| |||||| || || || ||||||||| || ||||| ||||| || || || | Sbjct 3525712 CGCAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTATAGTCTGAGAGAGTGCGGCCA 3525771 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| | || || || || || || |||||||| ||||| || || | |||||| ||| Sbjct 3525772 TCTTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTG 3525831 Query 34612 TCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 || ||| ||| | |||||| | || ||||| |||||||| | || || Sbjct 3525832 TCC-TGAATTTTAGCTTTAACATTCTCGATGGTGTCAGAAGGTTCCACTTCAAGTGTGAT 3525890 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || | || || ||||||||||||||| Sbjct 3525891 GGTTTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3525927 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || ||||| | ||| || || ||||| ||||| || || || || || | ||||| Sbjct 3525490 ACTAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAGAGGGTACGGCCATCTTCC 3525549 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| || || || || || |||||||||||||| || || | || ||||||||| | Sbjct 3525550 AATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 3525609 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||| | ||| || | ||||||||| |||||||| | ||| || || || Sbjct 3525610 AT-TTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGTGATGGTCTT 3525668 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | || || || |||||||||||| Sbjct 3525669 TCCCGTGAGGGTCTTAACGAAAATCTGCATG 3525699 >seq1168 Length=7897672 Score = 125 bits (138), Expect = 4e-24 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 47129 ACTTTTAAAGATTGGCCTCGTGGTTTGCGTCAGAGACCAAAAGAGTTAGCGGACGCGGGC 47188 || || ||||| ||||| ||| | ||| || | || |||| ||||| || || || Sbjct 2386355 ACGTTCAAAGACTGGCCGCGTAGCATGCCCCAAAAGCCGGAAGATTTAGCTGAAGCCGGT 2386414 Query 47189 TTCTTTTATACTGGTGAAGGTGATAAAACGAAGTGTTATTATTGTGATGGTGGTCTGAGA 47248 || | ||| || || |||| || || || |||||||| || ||||| || || |||| | Sbjct 2386415 TTTTATTACACCGGCCAAGGCGACAAGACTAAGTGTTACTACTGTGACGGAGGCCTGAAA 2386474 Query 47249 GATTGGAACGAAGAAGATATACCTTGGGAGGAGCACGCTCGTTGGTTTGATCGTTGT 47305 |||||| | |||| ||| |||| |||||| ||||||||||||||||||| |||||| Sbjct 2386475 GATTGGGAAAAAGACGATGTACCGTGGGAGCAGCACGCTCGTTGGTTTGACCGTTGT 2386531 >seq1196 Length=1288689 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 |||||| || | ||| |||||||||||| || || ||||| | ||| || | ||||| Sbjct 730193 CACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGACAATGTGCGGCCATCTTC 730252 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 |||||||| || || || || | ||||| |||||||| || | || ||||| ||| | Sbjct 730253 CAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGGGATACCTTCCTTATCT-T 730311 Query 34617 GATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTT 34674 || ||| | ||| || | || ||||| ||| ||||| || | ||| || || Sbjct 730312 GAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCT-TCCACCTCAAGGGTGATGGTC 730370 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || | ||||| || || |||||||| Sbjct 730371 TTCCCCGTAAGTGTTTTTACGAAGATCTGCAT 730402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314701595065133