Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1207 104 2e-17 >seq1207 Length=6027761 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || |||||||| ||||||||| || ||| |||| || || | Sbjct 3527978 ATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACACTTGAAGTGGAGCCTTCA 3527919 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| |||||| |||||||| || |||| || | Sbjct 3527918 GACACCATTGAGAAT--GTCAAAGCAAAAATTCAGGACAAAGAGGGAATTCCCCCAGACC 3527861 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || ||||| || || |||||||| || | |||| |||||| || |||| Sbjct 3527860 AGCAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGACTACA 3527801 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| ||| | ||| | ||| | ||| | ||||| ||| Sbjct 3527800 ACATCCAGAAGGAGTCTACTCTCCATCTAGTTCTTCGTCTCCGTGGTGGC 3527751 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || |||||||||||||||||| ||| ||| |||| || || | Sbjct 3526382 ATGCAGATCTTCGTTAAAACTCTTACTGGGAAAACTATCACACTTGAAGTTGAGCCTTCT 3526323 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| || || || ||||| || |||| || | Sbjct 3526322 GACACCATTGAGAAT--GTCAAAGCTAAGATTCAGGATAAAGAGGGAATTCCCCCAGACC 3526265 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || ||||||||||| || ||||| || | |||| | || || || | Sbjct 3526264 AGCAGCGTTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTCTCAGACTATA 3526205 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || || | || ||||| |||||| ||||||| || Sbjct 3526204 ACATCCAAAAGGAATCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGG 3526156 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || |||||||||||||||||| ||| ||| |||| || || | Sbjct 3527522 ATGCAGATCTTCGTTAAAACTCTTACTGGGAAAACTATCACACTTGAAGTTGAGCCTTCT 3527463 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| || || || ||||| || |||| || | Sbjct 3527462 GACACCATTGAAAAT--GTCAAAGCTAAGATTCAGGATAAAGAGGGAATTCCCCCAGACC 3527405 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || ||||||||||| || ||||| || | |||| | || || || | Sbjct 3527404 AGCAGCGTTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTCTCAGACTATA 3527345 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| | || ||||| |||||| ||||||| || Sbjct 3527344 ACATCCAGAAGGAATCGACTCTTCACTTGGTGTTGCGTCTGCGTGGTGG 3527296 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| ||||| || || || | ||||| ||| |||||| | || || ||| | Sbjct 3528209 AAAATGCAGATTTTCGTTAAGACCTTGACTGGTAAAACCATTACATTGGAAGTTGAACCC 3528150 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 | || |||||||| || ||| ||||| ||||||||||| ||||| Sbjct 3528149 TCTGA-----TACAATCGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCGC 3528095 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || ||||| || | || || || |||||||| ||||| |||| |||| | | |||| Sbjct 3528094 CTGATCAGCAGCGCCTGATCTTCGCTGGAAAACAGTTGGAAGACGGTCGCACCCTCTCCG 3528035 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | ||||| || ||||| || || | || ||||| ||||| | ||||| ||| Sbjct 3528034 ACTACAATATTCAAAAGGAATCAACCCTTCACTTGGTGCTGCGTCTCCGTGGTGGC 3527979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || |||||||| ||||| ||| || ||| | || || ||| | Sbjct 3527294 ATGCAGATATTCGTCAAAACTCTCACTGGAAAAACCATCACACTAGAAGTAGAACCATCT 3527235 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| || || || ||| ||||| |||||||| || |||| || ||| Sbjct 3527234 GACACAATAGAAAATGTTAAAGCTAAAATTCAGGACAAAGAGGGAATTCCCCCAGACCAG 3527175 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || || ||||| || || |||||||| || | |||| |||||| || |||||| Sbjct 3527174 CAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGACTACAAC 3527115 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||| || ||| ||| | ||| | ||| | ||| | ||||| ||| Sbjct 3527114 ATCCAGAAGGAGTCTACTCTCCATCTAGTTCTTCGTCTCCGTGGTGGC 3527067 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||| | ||||| ||| ||| || | || || || | Sbjct 3525470 ATGCAGATATTTGTGAAAACTTTAACTGGTAAAACTATAACTTTAGAAGTTGAGCCATCT 3525411 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||||| ||||| || ||| | || || | Sbjct 3525410 GACACAATTGAAAAT--GTTAAAGCCAAAATTCAGGACAAGGAGGGTATCCCTCCAGACC 3525353 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || || || || ||||||||||| |||| ||||| | | || ||||||| Sbjct 3525352 AACAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACCCTCTCTGATTACA 3525293 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| ||| ||||| ||||| | ||| | ||||| || Sbjct 3525292 ACATACAAAAAGAATCCACCTTGCACTTGGTACTCCGTCTTCGTGGTGG 3525244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355830735030027