Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1207 95.1 1e-14 >seq1207 Length=6027761 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||| | || ||| || | ||||| | |||||| || || || ||| || Sbjct 3525683 TAACGAAAATCTG--CATGCCACCACGCAAGCGCAGCACCAAGTGAAGGGTTGACTCCTT 3525740 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| |||||||| || | || || || | || || | ||| ||||| || || || | Sbjct 3525741 TTGGATATTATAGTCTGAGAGAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAA 3525800 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 |||||||||||| | ||| | | |||||||||| ||||| ||| | || | | Sbjct 3525801 ACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGAATTTTAGCTTTAACATTCTCGAT 3525860 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 || || | ||||| || | ||||| ||||||| || || || |||||||| || Sbjct 3525861 GGTGTCAGAAGGTTCCACTTCAAGTGTGATGGTTTTTCCAGTGAGGGTCTTAACAAAAAT 3525920 Query 39279 TTGCAT 39284 ||||| Sbjct 3525921 CTGCAT 3525926 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| || ||||| || |||||||| || ||| |||| Sbjct 2997782 ACGAAAATTTG--CATTCCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTT 2997839 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || || |||| ||| || ||| |||| || | ||| ||||| || || || | | Sbjct 2997840 GAATGTTGTAGTCGGAAAGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATC 2997899 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 |||||||||| | ||| | || || ||||| ||||| || | | | | | Sbjct 2997900 GCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAG 2997959 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || | ||| || || | ||||| ||||||| |||| || || || || |||| Sbjct 2997960 TGTCTGATGGCTCTACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTT 2998019 Query 39281 GCAT 39284 |||| Sbjct 2998020 GCAT 2998023 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || || ||||| || ||||| || | || || || | Sbjct 3526168 CGCAACACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAGTCTGAGAGAGTGCGACCA 3526227 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||| || || ||||| || | |||||||||||| | ||| | | |||||| Sbjct 3526228 TCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTA 3526287 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| || || ||||| || | | || || | ||| || || | |||||| Sbjct 3526288 TCCTGAATCTTAGCTTTGACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGTGTGATA 3526347 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || || |||||||| ||||| ||||| Sbjct 3526348 GTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCAT 3526382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429507378629813