Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq1527 271 6e-68 seq1196 91.5 1e-13 seq1207 84.2 2e-11 >seq1527 Length=671880 Score = 271 bits (300), Expect = 6e-68 Identities = 591/877 (67%), Gaps = 11/877 (1%) Strand=Plus/Minus Query 109140 CGCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTT 109199 ||| || || ||||| |||||||| || | || || || || ||| ||||| | Sbjct 504610 CGCATATTTCGTCGAGTGGGGTGTATATCCGAGGAAGTTCCCAGTTGACCGTGTGCCAAT 504551 Query 109200 GCCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAA 109259 || ||||| | |||||||||||||| || || ||||| ||||| || || || ||||| Sbjct 504550 CCCGAATTTGACCCATTTGCTGTACGGATTCATCCCAATTTGTGGAGGTGATGGGATCAA 504491 Query 109260 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCG 109319 |||| | ||| || |||||||| | |||||||||||||||||| | || || Sbjct 504490 CGACAGTTTGAAAGAAATCGAAGGCAGTTTCCAAGCTTTGCAACGATCGTGCAGTGGCCG 504431 Query 109320 CGACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGG 109379 || || ||||| || || || |||||| |||||||| | || || || || || || Sbjct 504430 GGAAGACTTCAAGGTTTCGATTCACGACCCGTGGGCCGCTCTCCAGAAGCCACAGAAGGG 504371 Query 109380 CGTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATT 109439 || | | |||||||| || |||||||||||||||||||| |||||| | ||| Sbjct 504370 ATTGTCTTCATGGAACGAACCTTACAAAGGCAACTTTGGACAGTTGATGATGTTGAAACA 504311 Query 109440 GGCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTT 109499 || || || || | ||||| | || ||||| || |||||||| ||| | || || || Sbjct 504310 AGCTAAACCCGACATGAAAATCTTGCCTTCCATCGGTGGGTGGACTTTGGCTGATCCCTT 504251 Query 109500 TTATTTTATGCAC-GATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTTT 109558 | | || | ||| || | | || |||| | ||| || | || ||| || || Sbjct 504250 CT-TCTTCTTCACTGACAAGTCTAAGAGAGACCGATTTGTAGCTTCAGTGAAGGACTTCC 504192 Query 109559 TACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAGG 109618 | | ||||| ||||| ||||| || ||||| || |||||||| || |||||||| | Sbjct 504191 TCGAGACCTGGAAGTTCTTCGACGGTGTTGACATCGACTGGGAGTTCCCTGGCGGCAAAG 504132 Query 109619 GTGCCAATCCGAGTCTCGGC-GACGCAACGCGCGACAGCAAAACGTACATTGCGTTGTTA 109677 ||||||| || | || ||| | | ||| || | | ||| | || | | Sbjct 504131 GTGCCAACCCTAACCTTGGCAGTCCCAA----GGATGGTGATGTATACGTGTCGCTTATG 504076 Query 109678 AAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCAACAAAACGTACGAATTG 109737 ||||| | || | |||||| | || || | | | || || | || || || Sbjct 504075 AAAGAACTTCGTGAAATGTTGAATGAGCTGTCAGCTGAAACTGGAAAGAAATATGAGCTG 504016 Query 109738 ACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGCGCAA 109797 || ||||| |||||||||| || ||||| | ||||| | ||| || || Sbjct 504015 ACTTCAGCCATCAGCGCCGGTTGGGACAAAATCCAAGTGGTGAACTACAAAGAAGCCCAG 503956 Query 109798 CAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAAC-AC 109856 |||| |||| | || || || |||| || || |||||||| || ||||| ||| || Sbjct 503955 AAATACATGGATCACATTTTCTTCATGAGTTATGACTTCAAAGGAGCCTGGTCGAACGAC 503896 Query 109857 GGAC-TTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGTACA 109915 || || ||| | || || | |||||||||| ||||||| ||||| || |||| Sbjct 503895 --ACTTTGGGCCACCAGACATCACTGTACGCGCCTGCGTGGAAACCAAAGGAGACTTACA 503838 Query 109916 CGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTATAA 109975 |||| ||| | | || ||| | ||||| || ||| || || || || ||| Sbjct 503837 CGACAGATTTCGGAGTTAAATACCTGTTAGCTCAGGGCGTGAACCCGAAGAAGATAATAG 503778 Query 109976 TTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGT 110012 | |||||||| ||||||||||| || ||||| || || Sbjct 503777 TCGGCGTAGCTATGTACGGCCGTGGTTGGACAGGAGT 503741 >seq1196 Length=1288689 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 101008 ATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATC 101067 ||| || |||| |||||||| ||||| |||||| || || || |||||||||||||| || Sbjct 730172 ATTACCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTC 730231 Query 101068 GGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTAC 101127 | || || | |||||||| ||||||||| || | ||||| | || ||||| Sbjct 730232 TGACAATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGG 730291 Query 101128 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165 || | ||||| || || |||||| |||||||| Sbjct 730292 AGGGATACCTTCCTTATCTTGAATTTTGGCTTTCACAT 730329 >seq1207 Length=6027761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||| | ||| ||||| ||||||||||||||||||| | || ||||||| Sbjct 2996249 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCGGAAAGCGTGCGTCCATCTTCC 2996308 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 || || ||||| || | || | | || |||||| || | |||||| ||||| | Sbjct 2996309 AACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGA 2996368 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| || |||| | | || |||| | | | ||| | ||| || ||||| Sbjct 2996369 ATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATGGTTTTT 2996428 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || |||||||| || | ||||||||||| Sbjct 2996429 CCGGTCAATGTCTTGACGAAAATTTGCAT 2996457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409624347997959