Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1251 581 4e-161 seq1346 95.1 2e-14 >seq1251 Length=5235866 Score = 581 bits (644), Expect = 4e-161 Identities = 1212/1781 (68%), Gaps = 38/1781 (2%) Strand=Plus/Minus Query 76771 TCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATAC 76830 ||||||||| |||||| ||||| | | | || || ||||| |||||||| ||||| | Sbjct 3096378 TCTTATCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTTGTTCGTAGATAATACATTC 3096319 Query 76831 CAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAG 76890 ||||||| ||||||| |||| | || || || || || ||||| |||| | | Sbjct 3096318 CAGTTTTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTG 3096259 Query 76891 GATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCG 76950 | || |||| ||| ||||| | ||||| |||||||| ||||| || ||||| || |||| Sbjct 3096258 GCTCAGCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCG 3096199 Query 76951 CCATTTTTATAATGGTC-TTTTGA--GGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA 77007 |||||| |||||| |||||| | ||| ||||||| ||||||| | | | | | | Sbjct 3096198 CCATTTG---AATGGTAGTTTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTTA 3096142 Query 77008 TATCATCTGGAA-GGTTTG--TATTTTGAATGGAACCACCATC-TGATATAATTGTATTC 77063 |||| | |||| ||||| |||||||||| || ||| || ||| ||||| ||| Sbjct 3096141 TATCTTTGGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGA-ATAATGAGATTT 3096083 Query 77064 TTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACT 77123 || ||||| |||| ||| | | ||||||||| | | | | ||| |||| || Sbjct 3096082 TTCATATCTTCATCCCATAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACA 3096023 Query 77124 ATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 77183 | ||| |||||||| || ||||| | | |||||||||| || | || || | | Sbjct 3096022 ACTTGGAATTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAA 3095963 Query 77184 GATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243 |||||||||||||| | ||||| || || |||||||| |||||||| || || | || Sbjct 3095962 GATTCATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGT 3095903 Query 77244 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 77303 ||| | || |||||| || ||||| ||||| | | ||| ||||| || ||| Sbjct 3095902 GAATTGCGAAGTCCATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCCAGAGGTCT 3095843 Query 77304 GAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTA 77363 | || | ||| | || ||||||| || || | ||| || |||| | Sbjct 3095842 GTTGGAGTTTTGTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACTACCATGA 3095783 Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAA 77423 ||||| ||||| || | | |||| || | ||||||||| || || || ||||||||| Sbjct 3095782 TATGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAA 3095723 Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGAGAT--CTTG-TGCTTCAATACTATCAAACGGA 77480 ||||| ||||| || || | | || || | | | | ||| ||| ||| | || Sbjct 3095722 TAAATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTC---ACTTTCATATGG- 3095667 Query 77481 TAATGTAAAAGAAT--AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 ||| | ||| ||| | |||||||||||| || || || || ||||||||||| | Sbjct 3095666 -TATGCGCATTAATACAAATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCTGT 3095608 Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598 | ||| |||| || ||| ||||| || | ||||| ||||| | || |||||||||| Sbjct 3095607 GCCTCATATTTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATAATTTTAT 3095548 Query 77599 TGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAAT--CAAATCTT-C 77655 | ||||| ||||| || || || || ||||| ||| | || | || Sbjct 3095547 TTAGATTCTGGGTAACTATCTTTGTGACCTCTTTAAGTTTGGTAAAGTTGTAAGTTTTGT 3095488 Query 77656 CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG 77715 |||| | ||||||||||||||||| |||||||||| |||||||||||| |||| | Sbjct 3095487 CATCATTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGTTTCATCTG 3095428 Query 77716 CGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775 | | ||| | | || || || || | || |||||||| || ||||| ||||||| Sbjct 3095427 CAGATGTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCCTAGATTTT 3095368 Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835 || || ||||| |||| || | ||||| || | ||| | || || || ||||| | Sbjct 3095367 TCTGATTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCCAGTTTCTA 3095308 Query 77836 TCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATT--TGTATC 77892 |||| ||| ||||||| |||||| | | ||| ||||| | | | || || | Sbjct 3095307 CTTGTGCTTCAATAATAGCTTTCCACA-GTATCTGTGCTTTGA--CTTGTTTCACATAAC 3095251 Query 77893 GCCTCTCTCTTTCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATC 77950 | | || |||||| || || | |||| ||||| || || ||||| ||| | Sbjct 3095250 GTTTTTCCTGTTCATATTTTTCATACAAAGCC--TCAAACTCTTCACCCCAGCAATCGGC 3095193 Query 77951 CAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTT 78010 || || || | |||| |||||||| | ||| || ||| || | ||| ||||| Sbjct 3095192 TAAACCTGGAGAATCATGAGGGCACATAATACTCCAATCTTCATTTTTTTCAACACGTTT 3095133 Query 78011 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATT 78070 |||||| | ||| || ||||| || ||| ||| || |||| | | ||| || || Sbjct 3095132 CATAAATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTACTTCCTCTTT 3095073 Query 78071 TCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 78130 || ||||||||| | ||| |||||||| | ||||||| |||||| ||||||| ||| Sbjct 3095072 ACCATGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGGGTTCTAAATA 3095013 Query 78131 TATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATT 78190 | ||| | | | || || |||||||| || || || || | ||||||||| |||||||| Sbjct 3095012 CACTGCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGGCAGTGTTATT 3094953 Query 78191 ATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACT 78250 ||||| | |||||| || | ||||| || || ||||||||||||| ||| || | Sbjct 3094952 GTAAACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAGCAATGTAGGT 3094893 Query 78251 TCCACTTGCGCGAAT--ATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATT 78308 || | || | ||| | | | ||| | | || || || || || ||||| || Sbjct 3094892 GCCTTTGGCTCTAATGCAGTGCACATGAACA--CCAATACCACCAGCTGATTTAGAGATC 3094835 Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGA 78368 | ||| || ||||||| || || || || ||||| || |||||||| |||| || | Sbjct 3094834 AAAGCACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCATAGCAACA 3094775 Query 78369 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCA 78428 |||||||| ||||| || | | || | ||| ||| | || ||| ||| Sbjct 3094774 AGAAAACATGAAGACAACTGTGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTGGACTCGCA 3094715 Query 78429 TGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 || || || |||| ||||| | || ||||||||| | ||| || | || | || Sbjct 3094714 TGAGTGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAACATCTTCA 3094655 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGG 78529 ||| ||||| | | || | ||| ||||||||||| || Sbjct 3094654 CCATGTATTCCGATAGAAACTCTCATTAACATATGCTGCGG 3094614 >seq1346 Length=947742 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 ||||||| ||| |||||||| | |||||||||||||||||||| || |||||||| ||| Sbjct 446683 TTTGATAAATCCACTTCTTCCACCGTCCAAAATGATGCCTCTGCCTTCTTATACATTTTC 446742 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAATC 48723 ||||| || || || || ||||| || ||||||| Sbjct 446743 CATATGTCGGGATACTGAATGGGGAATATTACAAATC 446779 Score = 89.7 bits (98), Expect = 7e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 ||||| || || || | |||||| || || ||||| || || |||||| |||| |||||| Sbjct 446283 TACATCTCAGAATGTACATTTTCCATAGCAATCTGGAACCCATAAAAAAATCTAGCTTCT 446342 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 || | || ||||| | |||| ||| | | || ||||| ||||||||||| Sbjct 446343 GTCACTTGGACCTCTTGTGAGAATCTTTCTACTAGGTTTTCATTGACTATTCCATCTGAC 446402 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCG 48593 || || |||||||| | |||||||| || |||| | |||| Sbjct 446403 GCTGCGAAAAATGCAAGCACATGTTTGATGAAATGTCGTTCG 446444 Score = 86.0 bits (94), Expect = 9e-12 Identities = 156/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||| ||| | ||| || || || || || ||||| || || | || || Sbjct 445070 TCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTTCTTC 445129 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || || | |||||| || || ||||| |||||||| || || ||||| || Sbjct 445130 AGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAGCC 445189 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTG-TGT--ATCCACCGTTGTGCCCAATCAGCC 48341 || || ||||| | |||| ||| || |||||| | |||||| || ||| Sbjct 445190 ACAATTCGTTCTCCAAATGTGGCAGTCTTGCTGGCGATCCACTGCAATGCCCAGTCGGCC 445249 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 48387 |||||||| || || |||| || || || ||||| || || |||| Sbjct 445250 TTCTTCTTCACGCAGGGCAGGGTCTCAATGGCATTGAACAGGAAGT 445295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694605402788640