Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1251 643 2e-179 seq1353 95.1 2e-14 seq1346 95.1 2e-14 >seq1251 Length=5235866 Score = 643 bits (712), Expect = 2e-179 Identities = 1224/1779 (69%), Gaps = 34/1779 (2%) Strand=Plus/Minus Query 75366 TCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATAC 75425 ||||||||| || || ||||| | | || || || ||||| |||||||| ||||| | Sbjct 3096378 TCTTATCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTTGTTCGTAGATAATACATTC 3096319 Query 75426 CAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCG 75485 ||||||| ||||||| |||| | || || || || |||||||| |||| | | Sbjct 3096318 CAGTTTTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTG 3096259 Query 75486 GATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCG 75545 | || |||| ||| ||||| | ||||| |||||||| ||||| || ||||| || |||| Sbjct 3096258 GCTCAGCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCG 3096199 Query 75546 CCATTTTTATAATGGTC-TTTTGA--GGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA 75602 |||||| |||||| |||||| | ||| ||||||| ||||||| | | | | | | Sbjct 3096198 CCATTTG---AATGGTAGTTTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTTA 3096142 Query 75603 TATCATCTGGAA-GATTTG--TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCT 75659 |||| | |||| | ||| |||||||||| ||||| || | ||||| ||| | Sbjct 3096141 TATCTTTGGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGAATAATGAGATTTT 3096082 Query 75660 TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAA 75719 | || || |||| ||| | | || |||||| | | | | ||| |||| |||| Sbjct 3096081 TCATATCTTCATCCCATAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACAA 3096022 Query 75720 TTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAG 75779 ||| |||||||| || ||||| | || |||||||||| || | || || | || Sbjct 3096021 CTTGGAATTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAAG 3095962 Query 75780 ATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAAC 75839 ||||||||||||| | ||||| || ||||||||||| |||||||| || || | || Sbjct 3095961 ATTCATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGTG 3095902 Query 75840 TATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 ||| | || |||||| || ||||| ||||| | | ||| ||||| || |||| Sbjct 3095901 AATTGCGAAGTCCATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCCAGAGGTCTG 3095842 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTAT 75959 ||| | ||| | || ||||||| || || | || || |||| || Sbjct 3095841 TTGGAGTTTTGTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACTACCATGAT 3095782 Query 75960 ATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAAT 76019 |||| || || ||| | ||||| || | ||| ||||| |||||||| || ||||||| Sbjct 3095781 ATGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAAT 3095722 Query 76020 AAATTGTTTCGAAAATCTTCTTATTAAGAT--CTTGC-GCTTCAAGACTATCAAAAGGAT 76076 |||| ||||| || || | | || || | | || | ||| ||| ||| | || Sbjct 3095721 AAATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTC---ACTTTCATATGG-- 3095667 Query 76077 AATGTAAAAGAAT--AAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 ||| | ||| ||||| |||||||| ||| || || || || ||||||||||| || Sbjct 3095666 TATGCGCATTAATACAAATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCTGTG 3095607 Query 76135 TCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194 ||| |||| || ||| ||||| || | || || ||||| | ||| ||||||||||| Sbjct 3095606 CCTCATATTTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATAATTTTATT 3095547 Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAAT--CAAATTTT-CC 76251 ||||| | ||||| || || || || |||||| ||| | || |||| | Sbjct 3095546 TAGATTCTGGGTAACTATCTTTGTGACCTCTTTAAGTTTGGTAAAGTTGTAAGTTTTGTC 3095487 Query 76252 ATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGC 76311 ||| |||||||||| || | ||| |||||||||| |||||||| ||| |||| || Sbjct 3095486 ATCATTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGTTTCATCTGC 3095427 Query 76312 ATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTG 76371 | | ||| | | || || ||||| | || ||||| || || || || ||||||| Sbjct 3095426 AGATGTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCCTAGATTTTT 3095367 Query 76372 TTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAAT 76431 || || ||||| | ||||| | ||||| || | | | | || ||||||||||| | Sbjct 3095366 CTGATTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCCAGTTTCTAC 3095307 Query 76432 CTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATT--TGTATCG 76488 |||| ||| ||||||| |||||| | | ||| ||||| | | | || || || Sbjct 3095306 TTGTGCTTCAATAATAGCTTTCCACA-GTATCTGTGCTTTGA--CTTGTTTCACATAACG 3095250 Query 76489 CTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAA 76548 || || |||||||| | ||| || ||||| || || ||||| ||| | || Sbjct 3095249 TTTTTCCTGTTCATATTTTTCATACAAAGCCTCAAACTCTTCACCCCAGCAATCGGCTAA 3095190 Query 76549 ACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCAT 76608 ||| ||| | |||| || ||||| | ||| || ||| || | ||| |||||||| Sbjct 3095189 ACCTGGAGAATCATGAGGGCACATAATACTCCAATCTTCATTTTTTTCAACACGTTTCAT 3095130 Query 76609 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC-TACGTTCTTCATTTC 76667 ||| | ||| || ||||| || ||| ||| || |||| | | ||| ||| || || | Sbjct 3095129 AAATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTAC-TTCCTCTTTAC 3095071 Query 76668 CTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 76727 | ||||||||| | |||||| ||||| | ||||||| |||||| ||||||| ||| | Sbjct 3095070 CATGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGGGTTCTAAATACA 3095011 Query 76728 TCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTAT 76787 || | | | ||||| |||||||| || || || || | |||||||||||||||||| | Sbjct 3095010 CTGCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGGCAGTGTTATTGT 3094951 Query 76788 AAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTC 76847 |||| | |||||| || | || || || || |||||||||||||| ||| || | | Sbjct 3094950 AAACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAGCAATGTAGGTGC 3094891 Query 76848 CACATGCACGAAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAG 76905 | || | ||| | | | || || | || || || || || ||||||||| | Sbjct 3094890 CTTTGGCTCTAATGCAGTGCACAT-GA-ACACCAATACCACCAGCTGATTTAGAGATCAA 3094833 Query 76906 AGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAG 76965 |||||| ||||||| |||||||| || ||||| || || ||||| |||| || ||| Sbjct 3094832 AGCACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCATAGCAACAAG 3094773 Query 76966 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATG 77025 |||||| ||||| || | | || | ||| ||| | || ||| ||||| Sbjct 3094772 AAAACATGAAGACAACTGTGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTGGACTCGCATG 3094713 Query 77026 AGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTG 77085 |||||| |||| ||||| | || ||||||||| | ||| | || || | ||| Sbjct 3094712 AGTGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAACATCTTCACC 3094653 Query 77086 ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGG 77124 ||| ||||| | || || | ||| ||||||||||| || Sbjct 3094652 ATGTATTCCGATAGAAACTCTCATTAACATATGCTGCGG 3094614 >seq1353 Length=2130601 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 169535 TTATGACTCCTATCAATCCTATGTTGGCCGAATCATGCGATTCTGTTAACAAGGCATTTA 169594 ||||||||||| | ||||||||||| ||| ||||| | ||||| | | ||| | | Sbjct 1736940 TTATGACTCCTGTGCGGCCTATGTTGGCTGAAGCATGCAAATCTGTAGAAATGGCTATGA 1736881 Query 169595 AAAAATTTCCATCTGGGATGTTTGCAGAAGTCAAATATGACGGTGAACGAGTGCAAGTTC 169654 |||||| ||| || |||| | | ||| ||||||||||||| ||| |||| ||||| | Sbjct 1736880 AAAAATGTCCCAACGGTATGTATTCTGAAATCAAATATGACGGAGAAAGAGTACAAGTGC 1736821 Query 169655 ATAAAAA 169661 ||||||| Sbjct 1736820 ATAAAAA 1736814 >seq1346 Length=947742 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||| ||| | ||| || || || ||||||||||| || || | ||| || Sbjct 445070 TCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTTCTTC 445129 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || || | |||||| || || ||||| |||||||| || || || || || Sbjct 445130 AGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAGCC 445189 Query 46774 ACAAGTCTCTCTCCGTAACTGGCA-TCATTATG--AATCCACCTTTGAGCCCAATCAGCC 46830 |||| || ||||| | ||||| || | || |||||| ||||| || ||| Sbjct 445190 ACAATTCGTTCTCCAAATGTGGCAGTCTTGCTGGCGATCCACTGCAATGCCCAGTCGGCC 445249 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 46876 || ||||| || || |||| || || || ||||| || || |||| Sbjct 445250 TTCTTCTTCACGCAGGGCAGGGTCTCAATGGCATTGAACAGGAAGT 445295 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 ||||| || ||||| | ||||| ||||| ||||| || || |||||| |||| ||||| Sbjct 446283 TACATCTCAGAATGTACATTTTCCATAGCAATCTGGAACCCATAAAAAAATCTAGCTTCT 446342 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 || | || |||||| | |||| ||| | || ||||| ||||||||||| Sbjct 446343 GTCACTTGGACCTCTTGTGAGAATCTTTCTACTAGGTTTTCATTGACTATTCCATCTGAC 446402 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAAT 47074 || || |||||||| | |||||||| || |||| Sbjct 446403 GCTGCGAAAAATGCAAGCACATGTTTGATGAAAT 446436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712869335824320