Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1207 114 1e-20 >seq1207 Length=6027761 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || || ||||| ||||| || |||||||| Sbjct 3527979 GCCACCACGGAGACGCAGCACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGA 3528038 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| || | ||| || || ||||| ||||||||||| || || | || Sbjct 3528039 GAGGGTGCGACCGTCTTCCAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGG 3528098 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || || ||||| |||||| |||| ||| | | || || | || | Sbjct 3528099 AATGCCTTCTTTGTCTTGGATTTTG-GCTTTTACGTTTTCGATTGTATCAGAGGGTTCAA 3528157 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| || || |||||||| |||| ||||| |||||||||||||| || Sbjct 3528158 CTTCCAATGTAATGGTTTTACCAGTCAAGGTCTTAACGAAAATCTGCATTTT 3528209 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || | || | ||||| || || || |||||| || || |||||||| || Sbjct 3525699 GCCACCACGCAAGCGCAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTATAGTCTGA 3525758 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || | ||||||||| ||||| |||| ||||| ||||| | ||| Sbjct 3525759 GAGAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 3525818 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||| |||||| ||| |||| |||| ||| | | ||||| | |||| Sbjct 3525819 AATTCCCTCTTTGTCC-TGAATTTTAGCTTTAACATTCTCGATGGTGTCAGAAGGTTCCA 3525877 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || ||||| || || || ||||| || |||||||||||| Sbjct 3525878 CTTCAAGTGTGATGGTTTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3525927 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || || |||||||| ||||||||||| ||| Sbjct 3527296 CCACCACGCAGACGCAACACCAAGTGAAGAGTCGATTCCTTCTGGATGTTATAGTCTGAG 3527355 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | |||||| ||||| || |||| ||||| ||||| | |||| Sbjct 3527356 AGAGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 3527415 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| || ||| ||| | || |||| || | | ||||| | ||| || Sbjct 3527416 ATTCCCTCTTTATCC-TGAATCTTAGCTTTGACATTTTCAATGGTGTCAGAAGGCTCAAC 3527474 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || ||||| || || || || || ||||| ||||||||| Sbjct 3527475 TTCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCATG 3527523 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||| ||| || || || ||||| || || ||| Sbjct 3525244 CCACCACGAAGACGGAGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAG 3525303 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || | || || || ||||| ||||| ||||||||||| | || Sbjct 3525304 AGGGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGG 3525363 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| |||| |||| ||| | | ||||| | ||| || Sbjct 3525364 ATACCCTCCTTGTCC-TGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAAC 3525422 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | ||||| |||||||| || | || || || || ||||||||| Sbjct 3525423 TTCTAAAGTTATAGTTTTACCAGTTAAAGTTTTCACAAATATCTGCATG 3525471 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || || ||||||||| ||||||||||| || Sbjct 3525927 GCCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGA 3525986 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || | |||||||| || || |||| ||||| ||||| | ||| Sbjct 3525987 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 3526046 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||| |||||| ||| |||| |||| || | | ||||| | || | Sbjct 3526047 AATTCCCTCTTTGTCC-TGAATTTTAGCTTTGACATTTTCTATTGTGTCAGATGGTTCTA 3526105 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | || || ||||| || || || || || ||||| |||||||| Sbjct 3526106 CTTCTAGTGTGATGGTTTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3526154 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || || ||||| || ||||||||||| ||| Sbjct 3526156 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAGTCTGAG 3526215 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | |||||| ||||| || |||| ||||| ||||| | |||| Sbjct 3526216 AGAGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 3526275 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| || ||| ||| | || |||| || | | ||||| | ||| || Sbjct 3526276 ATTCCCTCTTTATCC-TGAATCTTAGCTTTGACATTCTCAATGGTGTCAGAAGGCTCAAC 3526334 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || ||||| || || || || || ||||| ||||||||| Sbjct 3526335 TTCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCATG 3526383 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 41659 ATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTG 41718 ||||| ||| || |||||||| |||||||| |||||||| || | || || | || Sbjct 3525495 ATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAGAGGGTACGGCCATCTTCCAATTG 3525554 Query 41719 CTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 ||| || ||||| |||| ||||||||||| | ||| | || |||||||| |||||| Sbjct 3525555 CTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTT 3525614 Query 41779 TTGCTTCAACGACGACACA-GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCG 41837 |||| || || ||||| | ||||| || | || || || || |||| Sbjct 3525615 A-GCTTTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGTGATGGTCTTTCCCG 3525673 Query 41838 TCAGCGTCTTTACGAAAATCTGCATG 41863 | || ||||| ||||||||||||||| Sbjct 3525674 TGAGGGTCTTAACGAAAATCTGCATG 3525699 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || || ||||||||| ||||| ||||| || Sbjct 3526383 GCCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3526442 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || | |||||||| || || |||| ||||||||||| | ||| Sbjct 3526443 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 3526502 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCA 41813 | || |||||||| |||||| |||| || || ||||| | |||| Sbjct 3526503 GATGCCTTCCTTGTCTTGGATTTTA-GCTTTGACATTCTCAATTGTGTCAGAAGGTTCCA 3526561 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || || || || || || ||||| || |||||||||||| Sbjct 3526562 CTTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3526611 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || || ||||||||| ||||| ||||| || Sbjct 3526611 GCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3526670 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || | |||||||| || || |||| ||||||||||| | ||| Sbjct 3526671 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 3526730 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCA 41813 | || |||||||| |||||| |||| || || ||||| | |||| Sbjct 3526731 GATGCCTTCCTTGTCTTGGATTTTA-GCTTTGACATTCTCAATTGTGTCAGAAGGTTCCA 3526789 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || || || || || || ||||| || |||||||||||| Sbjct 3526790 CTTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3526839 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || || ||||||||| ||||| ||||| || Sbjct 3526839 GCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3526898 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || | |||||||| || || |||| ||||||||||| | ||| Sbjct 3526899 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 3526958 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCA 41813 | || |||||||| |||||| |||| || || ||||| | |||| Sbjct 3526959 GATGCCTTCCTTGTCTTGGATTTTA-GCTTTGACATTCTCAATTGTGTCAGAAGGTTCCA 3527017 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || || || || || || ||||| || |||||||||||| Sbjct 3527018 CTTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3527067 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || || ||||||||| ||||| ||||| || Sbjct 3527523 GCCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3527582 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || | |||||||| || || |||| ||||||||||| | ||| Sbjct 3527583 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 3527642 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCA 41813 | || |||||||| |||||| |||| || || ||||| | |||| Sbjct 3527643 GATGCCTTCCTTGTCTTGGATTTTA-GCTTTGACATTCTCAATTGTGTCAGAAGGTTCCA 3527701 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || || || || || || ||||| || |||||||||||| Sbjct 3527702 CTTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATG 3527751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462261808981200