Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 264 1e-65 seq1 154 2e-32 seq2 127 2e-24 >seq3 Length=33601328 Score = 264 bits (292), Expect = 1e-65 Identities = 318/430 (74%), Gaps = 2/430 (0%) Strand=Plus/Plus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || |||||||||||| ||||||| || || ||||| || |||||| || || Sbjct 22123232 TGTTCAATGCCATCGAGACGCTGCCGTGTGTGAAGCGTAAGGCGGACTGGGCGATGAACT 22123291 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | ||| ||||| || ||||||||| | ||||| ||||| || ||||||| Sbjct 22123292 GGATCTCGAGCAAGAAGGCCAACTACGGCGAGCGTATCGTGGCGTTCGCAGCTGTCGAGG 22123351 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || ||||||| ||||| || || ||||| || ||||| ||||| || ||||| |||| Sbjct 22123352 GCATCTTCTTCAGCGGCAGCTTTGCGGCCATCTTCTGGCTGAAGAAGCGTGGCCTGATGC 22123411 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || |||| ||| ||| ||| | ||||| | || || ||| ||||||||||||||| Sbjct 22123412 CGGGTTTGACGTTCTCCAATGAGTTGATCTCGCGCGATGAAGGTTTGCATTGCGACTTTG 22123471 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG-GCGCGCGTCAGGGAGATC 117244 ||||| | |||||||| || || | ||| | | | |||| ||| || | ||| || Sbjct 22123472 CCTGTCTCATGTTCAAGTATCTGATACAG-AAGCCATCGCGCAAGCGTGTGACGGACATT 22123530 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTG 117304 || || ||||| || ||||||||| ||||| ||| |||| ||||| || | || Sbjct 22123531 ATCCGGGATGCGGTTGCAATCGAGCAGGAGTTCCTGACCAAAGCACTGCCAGTCGATATG 22123590 Query 117305 CTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 |||| | ||||||||| ||||| || ||||||||||| || || || |||||||| Sbjct 22123591 TTGGGCATGAATTGCGAACTCATGTCCCAGTACATCGAGTTTGTGGCGGATCGGCTGCTG 22123650 Query 117365 CTCGAGCTGG 117374 | ||||||| Sbjct 22123651 GTGGAGCTGG 22123660 Score = 199 bits (220), Expect = 4e-46 Identities = 204/264 (77%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 ||||||| || || |||||||| ||||| ||||| || || || ||||||| || |||| Sbjct 22122871 AGGCCGAAGCTTCTTTCTGGACGGTCGAAGAGGTCGATCTATCTAAGGACATGAAAGACT 22122930 Query 116715 GGGA-GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||| ||||| ||| | |||||| || || ||| ||| ||||| ||||| || ||| Sbjct 22122931 GGGATGCGCT-GAAGCCGAGCGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTTGCC 22122989 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 ||| ||| || ||||| ||||| ||||||||||| || ||| |||||||| |||||| Sbjct 22122990 GCCTCCGATGGTATCGTGAACGAAAATCTGGTCGAACGGTTCAGCCAGGAGGTTCAGGTG 22123049 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | ||||| || || ||||| || || |||||||| ||||| ||||||||| || ||| Sbjct 22123050 ACGGAGGCTCGCTGTTTCTATGGTTTCCAGATCGCTATGGAAAACGTGCACAGCGAGATG 22123109 Query 116894 TATTCGACCCTCATCGACACGTAC 116917 || ||| || |||||||| ||| Sbjct 22123110 TACTCGCTGCTTATCGACACATAC 22123133 >seq1 Length=37976048 Score = 154 bits (170), Expect = 2e-32 Identities = 167/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||||||||| ||||| |||||||| |||| |||| |||| Sbjct 36315557 AAAATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTCGAGGTCG-AGCC 36315615 Query 40747 A-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | | | | | |||| || || | ||||| ||||| |||||| | || Sbjct 36315616 ATCGGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGA 36315675 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| |||||||| || | || ||||| ||||| Sbjct 36315676 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTTCGGACTA 36315735 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||||| | || |||||||| || |||| Sbjct 36315736 CAACATCCAGAAGGAGTCGACCCTGCATCTTGTACTGCG 36315774 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| |||||||| || ||||||||| | || ||||| || | Sbjct 21735487 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCG 21735428 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || || | ||||| |||||||| || |||| ||| Sbjct 21735427 GATACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAG 21735368 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| |||||||| |||| || ||||| |||||||||| Sbjct 21735367 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGACGGACGTACCCTGTCCGACTACAAC 21735308 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| | ||||| || || ||| ||||| Sbjct 21735307 ATCCAGAAGGAGTCGACGCTTCACCTGGTGCTGCGC 21735272 >seq2 Length=51801758 Score = 127 bits (140), Expect = 2e-24 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || || || |||||||| | || ||||| ||| Sbjct 21000606 AACATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGA-GCC 21000548 Query 40747 ACCGACAGCG--TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | || || || |||| | |||| ||| |||| ||||| || ||||| ||| | | Sbjct 21000547 ATCGGATACGATTGAGAACG-TGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCAG 21000489 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| || || |||||||| || | ||||| || ||||| Sbjct 21000488 ATCAGCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGCACGCTGTCCGACT 21000429 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||||| | |||||||| Sbjct 21000428 ACAACATCCAGAAGGAGTCTACGCTGCA 21000401 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| |||||||| | || || || | | Sbjct 36664692 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTTCG 36664751 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | ||||| |||||||| || | || || Sbjct 36664752 GATACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 36664810 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| |||| || ||||| ||| || || Sbjct 36664811 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACCCTGTCCGATTATAA 36664870 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || ||||| Sbjct 36664871 CATCCAGAAGGAGTCGACCCTGCA 36664894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217905511760