Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 138 7e-28 seq2 114 8e-21 >seq1 Length=37976048 Score = 138 bits (152), Expect = 7e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||||||| | || || ||||| ||||||||||||||| Sbjct 21735261 CCACCACGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 21735320 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| ||||||||| ||||| ||||| |||||||| || || Sbjct 21735321 AGGGTACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGA 21735380 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | |||| ||| | | ||||| Sbjct 21735381 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 21735440 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || | |||||||| || || ||||| ||||| || ||||||||||||| Sbjct 21735441 TCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCG 21735489 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || |||| | || |||| ||||||||| ||||| Sbjct 36315750 TCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAG 36315691 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||| || ||| | | ||||||||| ||||| ||| | || Sbjct 36315690 ATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTC 36315631 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||||| || | |||||||| ||||||||||| |||||||| Sbjct 36315630 TCGATGGTGTCCGATGGCTCGACCTCGAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACG 36315571 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 36315570 AAAATCTGCAT 36315560 >seq2 Length=51801758 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | || |||| ||| | ||| || ||||| |||||||||||||| Sbjct 21000376 TCCACCACGCAGACGTAGGACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGGA 21000435 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 |||| || | || |||| |||||| || ||||| || || |||||||| || ||| Sbjct 21000436 CAGCGTGCGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGG 21000495 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| |||||| ||| | | | |||| ||| | | ||||| Sbjct 21000496 AATGCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCAATCGTATCCGATGGCTCGAC 21000555 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || || || ||||| || |||||||| Sbjct 21000556 CTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 21000603 Score = 100 bits (110), Expect = 2e-16 Identities = 172/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 34141 TTCGTTGCAGATTTCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTC 34200 ||||||||| | | | || ||| || ||||| | || |||| ||| | || || Sbjct 36664938 TTCGTTGCATAGAT--TAGATTCCACCACGCAGACGGAGGACCAAGTGCAGGGTCGACTC 36664881 Query 34201 TTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAAT 34260 ||||| ||||| || |||||||| ||| |||| |||| ||||||||| ||||| || Sbjct 36664880 CTTCTGGATGTTATAATCGGACAGGGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGAT 36664821 Query 34261 GAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 | |||||||| || || | || ||||||||| ||||| ||| | | | Sbjct 36664820 CAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTC 36664761 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || | ||| | | || || |||| |||||||| ||||| || | || ||||| || Sbjct 36664760 GATGGTATCCGAAGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAA 36664701 Query 34381 GATCTGCAT 34389 ||||||||| Sbjct 36664700 GATCTGCAT 36664692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071208574560