Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5 248 1e-60 seq2 172 8e-38 seq1 147 3e-30 seq3 138 2e-27 >seq5 Length=12318379 Score = 248 bits (274), Expect = 1e-60 Identities = 658/1001 (66%), Gaps = 72/1001 (7%) Strand=Plus/Plus Query 126723 ACCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTT 126782 ||| || ||||||| || || |||||||| | ||||||| || |||| || ||| Sbjct 8902432 ACCGCGCGTCGTCAAGGCCGGCGTACCGAGCCGGATGCCGGACGGATTGAGCGCCGACTT 8902491 Query 126783 GTCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGC 126842 ||| || ||||| ||||| |||||||| ||||| | ||||| ||| ||| || Sbjct 8902492 GTCACCCGGTACCGTGTTCTTGTTGCACGCGATCGAAATCTCCTCGAGAATGTACTCGGC 8902551 Query 126843 CGGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACATCGGTACC 126902 | || || | || || || ||||| ||| || || | || |||||||||||||| Sbjct 8902552 TCGCGCACCGGTGATGCCGACCGGGCGCAGATCGACCAGCACGAGGTGCACATCGGTACC 8902611 Query 126903 GCCAGTGGTGACGGTGTAGCCTCGTGAAACGAGTC-CCTCTGCCAACAA--CTGTGCATT 126959 ||| || | || | |||||| | | |||| || ||| || | ||||||| Sbjct 8902612 GCCCGTCGCCACCGAGTAGCCC---GCATCGAGCAGCCCCTGGCAGAGGGCCCGTGCATT 8902668 Query 126960 TCGCACCACTCGTCTTTGGTAGAGTGCAAACTCTAGAGTGGTGGCCTGGTGCATTGCGGT 127019 || | ||| | ||||| ||||| | || | ||||| ||||| ||| Sbjct 8902669 CCGGATCACCTGCTCCTGGTACGCCCGGAACTCGGGTGTCTTTGCCTGCTGCATGCAGGT 8902728 Query 127020 GGCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGGCTCG 127079 ||||| | ||||||| |||||||||||| || || ||||| || || ||||| ||| | Sbjct 8902729 AGCGATGCCAGCAATCGCGTGATTGTGCGGGCCGCCCTGCAGCCCCGGGAACACTGCTTG 8902788 Query 127080 TTC--------------AAT-----------TTC--------CTGCTCTA----GTGAT- 127101 | ||| ||| | ||| | | || Sbjct 8902789 GTTGACGCGCGACTCCAAATCGTATAGCACCTTCTCGCCGTTCGGCTTCACGCTGCGAAC 8902848 Query 127102 ----TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGT 127157 || ||| | |||||||| ||||| || || || | ||| |||||||| || || || Sbjct 8902849 GCCCTTACGGAAGAAGATGACACCGGCCCGGGGGCCCCGGAGTGTCTTGTGGGTCGTCGT 8902908 Query 127158 GGTCACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGC 127217 | | || | ||| ||||| || || || ||||| | |||| | | |||||| Sbjct 8902909 GCTGACCACGTCCGCGTACTCGAACGGCGACGGGATGACACCGGCCGCGA-CGAGCCCGG 8902967 Query 127218 A-ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGG-CTGCATCGGCAATCTCTCGGAAT 127275 | ||||| || |||||||| | ||| | | ||| ||| || |||||||| ||||| Sbjct 8902968 AGATGTGCGCCATATCGGCGAACAGGTACGCACCGTTCTGG-TCCGCAATCTCGCGGAAG 8903026 Query 127276 CGTCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTG 127335 ||| | ||||| | || || | ||||| | ||||||| ||||| | | | || ||| Sbjct 8903027 CGTTTGTAGTCGAGGCAGCGCGAGTAGCACGAGATGCCGGCAATGATGACCTTCGGCTTG 8903086 Query 127336 AATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACC 127395 || || || ||| | || ||| | || |||| || || ||||| | | |||| Sbjct 8903087 AAGAGGCGAGCCGACTCCTCCAGCTTGTCGTAATCGATCAGACCGGTCTGGGCGTTCACC 8903146 Query 127396 TTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGTT-GCG----G 127443 |||||||||||||| ||||| |||| || || || || | |||| ||| | Sbjct 8903147 TTGTACGGCATGCTCTCGAAGAAGATGGAGGTGGCAGAGATTTTCTTCGTTTGCGTCATG 8903206 Query 127444 AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGT 127503 || ||||||||||| ||||| ||||||||||| ||||| |||||||| | |||||||| Sbjct 8903207 AAACCGTGCGTCAGATGGCCACCGTCGGGCAGGTCGAGGCCCATGATGCGCCCGTGCGGC 8903266 Query 127504 TTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACAC 127563 | | | | ||||| ||||| |||||||| |||||||||||| || || || Sbjct 8903267 TCGATCAGCGCCGTGTAGACGGCGAAGTTGGCTGGCGAGCCCGAGTAAGGCTGCACGTTG 8903326 Query 127564 ACTCCCCA----TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAG 127619 ||||| | |||| | ||| | |||| ||| ||| |||| || || Sbjct 8903327 CAGCCCCACTGCTCCGGA----TCCAACCGGTACGCCTCGAGCGCCCGCCGCTGGGCCAG 8903382 Query 127620 CAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTATC 127660 ||||||||| |||||| ||||||||||| || ||||||| Sbjct 8903383 CAGTTCGATCTCATCGATGAACTCGTTACCGCCGTAGTATC 8903423 >seq2 Length=51801758 Score = 172 bits (190), Expect = 8e-38 Identities = 396/588 (67%), Gaps = 14/588 (2%) Strand=Plus/Plus Query 49794 TTACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCG 49853 || |||| || || ||||||| || ||||||||||| |||||| ||| ||||| | | Sbjct 5334263 TTTCCGTCGAACCGACCATGTTCCTGTACATGATGGCGTTCATGCTGACATCGGTCGTGG 5334322 Query 49854 AGCAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGT 49913 |||| ||||| | | ||| |||| ||||| ||| | || || ||||||| || | | Sbjct 5334323 AGCAAGCGTTCTTTCTCTACAAAGCCTGCACTGTCGATCACGGGTACTCGCATGATATCT 5334382 Query 49914 GCCACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACAT 49973 | | |||||| |||||| | |||||||| || || ||| || || || | Sbjct 5334383 GTCTCAACATCGAGCAGTACCAGGACATCAAGAAGGAGGTGCAGGTCACGACCTCCACCT 5334442 Query 49974 TTCATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAG 50033 |||||||||||||| | |||| | ||||||||| | | | || | || || | Sbjct 5334443 TTCATCAGTGGAACAACATCGCCATGTACGTGGTGCCCATCTTTCTCGCAATGTTTCTCG 5334502 Query 50034 GATCCTATAGT--GATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAA 50091 | | || | || || || | || | ||| || || || ||||| || || Sbjct 5334503 G-TGCT-TGGTCCGACCGGAGGGGCCGCAAGCTTCCGCTGGTGCTCGGACTGTGCGGAAA 5334560 Query 50092 ACTCTTTTTCTCGGCAATGCTAACCGTAAACAGTCTCAAGAGC---TGGCCCGTAGAGTA 50148 || || | ||||| ||| || || |||| | | | | |||||||| ||||| Sbjct 5334561 GCTGTTCTACTCGGTCATGATAGTGGTGAACACGCGGATGCCCACGTGGCCCGTCGAGTA 5334620 Query 50149 TATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGC 50208 || |||||||| || | | || || | || ||||| |||||| | | || || || Sbjct 5334621 CATTATCTACACCGCGACACTGCCCAGCGTGCTGACCGGTGCCGATATAGCGATCTTTGC 5334680 Query 50209 -AGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGG 50267 ||| ||||| || ||||| ||||| | |||| |||||| | |||||||| || | Sbjct 5334681 TAGC-TGCTTCGCTTACATCTCCGATATCACGACGGTGGAGCAGCGCACGCTGCGTATAA 5334739 Query 50268 GCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTGC 50327 || ||||||| ||| |||||||||||||| | ||||||||| |||||| |||| Sbjct 5334740 CGATTCTGGATGCGACCTATCTGAGCACGATGCCGATCGGTGTGGCACTCGGTAATGTGA 5334799 Query 50328 TGTGGAAGCGATTCCG----ATCCTACCCCATCATGTTTGCAATCAAT 50371 | | || | | ||| ||| ||| | |||||||| | |||||| Sbjct 5334800 TCTTTAA-CCACACCGGCAAATCGTACACGATCATGTTCACCATCAAT 5334846 >seq1 Length=37976048 Score = 147 bits (162), Expect = 3e-30 Identities = 337/505 (67%), Gaps = 2/505 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || || | || | || ||||| || ||||| | ||| Sbjct 150244 CAGGGTGGTAACAAGCGACCTGGGGCATTTGCTATTTATTTGGAGCCATGGCATGGGGAT 150185 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | ||||| ||| | || | || ||| | || ||||||| || || || ||| Sbjct 150184 ATATTTGAGTTTTTGGACCTTAAAAAGAACACGGGAAAAGAAGAGGTCCGCGCTAGAGAC 150125 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || || || ||| | || |||||||||||| |||| ||| | | | Sbjct 150124 ATGTTCTACGCTCTGTGGATTCCTGATTTGTTCATGCAGCGTGTCGAAGCAAACGAAATG 150065 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||||| ||||||||||| || | || ||| |||| || ||||| || ||||| Sbjct 150064 TGGAGTTTAATGTGCCCCCACGATTGTCCTGGTTTGTCGGAGACATGGGGTGAGGAGTTC 150005 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175 | ||||| | |||||||| ||||| || | | | ||| || | || | | Sbjct 150004 CAAAAACTCTACACTGGCTACGAGCGCGAGGGTCGTTTCACGCGACAGGTTAAGGCGCAA 149945 Query 97176 GAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTAC 97235 || ||||| |||||| | | | ||||| ||||||||| || ||||| |||||| Sbjct 149944 GATTTGTGGTTCGCCATCATAGAGTCGCAGGTTGAGACTGGAGTGCCTTACATGCTCTAC 149885 Query 97236 AAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294 || ||| |||| ||||| || || ||||||| || | || || |||||| | || || Sbjct 149884 AAAGAT-GCGTGCAATCGAAAGAGTAACCAACAAAACGTTGGAACGATCAAGTGTTCAAA 149826 Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGC 97354 |||||||| |||||||| || ||| | || || || | || || || |||||| Sbjct 149825 CCTGTGCACCGAAATTGTGGAATACTCTTCAAAAGATGAAATTGCTGTGTGTAATCTGGC 149766 Query 97355 ATCGGTCAATCTGCCCAAGTTTGTA 97379 ||| || ||| || ||||||| Sbjct 149765 CTCGATCGCTCTAAACATGTTTGTA 149741 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 134242 TCACAAATCAGTTGTGCGATGCGATCACCCTT--TGACACTACAAAGTCGTCATCGGAAT 134299 || || || | ||| || || ||||| ||||| |||| || ||| ||| | ||| || Sbjct 946304 TCGCAGATGAATTGAGCAATACGATCGCCCTTCTTGAC-CTCGAAA-TCGGCCTCGCCAT 946361 Query 134300 GGTTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCGGCTCCGA 134359 ||||||| || || ||||| | |||||| || || |||||||||||| ||||||| Sbjct 946362 GGTTAAACAGCACAACTCCGACGTTTCCGCGGTAATCTTCGTCCACGACACCAGCTCCGA 946421 Query 134360 CGTCGATTCCGTACTTGGCTGCCAGTTTGGATCGCGGAGCAATCCTACCGTAGCAACCTT 134419 ||||||| || || | || ||| ||| || || || | || |||||||| || | Sbjct 946422 CGTCGATAAAGTTTTTCACCGCTAGTCCGGAACGAGGCGCCACCCGGCCGTAGCATCCCT 946481 Query 134420 CCGG 134423 |||| Sbjct 946482 CCGG 946485 >seq3 Length=33601328 Score = 138 bits (152), Expect = 2e-27 Identities = 231/331 (70%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||| ||||| || || |||||||||||||| || || |||||||||||||| ||| Sbjct 22123330 GTGGCGTTCGCAGCTGTCGAGGGCATCTTCTTCAGCGGCAGCTTTGCGGCCATCTTCTGG 22123389 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || |||||||| || || ||||| || ||||| | || ||||| || || || || Sbjct 22123390 CTGAAGAAGCGTGGCCTGATGCCGGGTTTGACGTTCTCCAATGAGTTGATCTCGCGCGAT 22123449 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609 || || | || || ||||||||| ||| |||| ||| |||||| | | || Sbjct 22123450 GAAGGTTTGCATTGCGACTTTGCCTGTCTCATGTT---CAAGTATCTG-ATACAGA---- 22123501 Query 125610 AGATCCAGCGATGAAAAG-GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 | ||| || || | || | ||||| | ||||| || || || || || Sbjct 22123502 --AGCCATCGCGCAAGCGTGTGACGGACATTATCCGGGATGCGGTTGCAATCGAGCAGGA 22123559 Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 ||| || ||| || | || || ||| ||| | |||||||| ||| | || |||| | | Sbjct 22123560 GTTCCTGACCAAAGCACTGCCAGTCGATATGTTGGGCATGAATTGCGAACTCATGTCCCA 22123619 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 |||||| ||||||||||| ||||| || ||| Sbjct 22123620 GTACATCGAGTTTGTGGCGGATCGGCTGCTG 22123650 Score = 131 bits (144), Expect = 2e-25 Identities = 202/286 (71%), Gaps = 13/286 (5%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || || || ||||||||||||||||||||||| || |||||| || | || | Sbjct 22122871 AGGCCGAAGCTTCTTTCTGGACGGTCGAAGAGGTCGATCTATCTAAGGACATGAAAGACT 22122930 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGT----TTATATCGCACATTTTGGCCTTC 125153 |||| | | |||| | ||||||| || |||| ||||| | | |||||| Sbjct 22122931 GGGATGCGC-------TGAAGCCGAGCGAGCGTCACTTTATCTCGCATGTGCTCGCCTTC 22122983 Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213 ||||||| ||||||||| ||||| ||||| |||||| | ||| ||| || ||| | Sbjct 22122984 TTTGCCGCCTCCGATGGTATCGTGAACGAAAATCTGGTCGAACGGTTCAGCCAGGAGGTT 22123043 Query 125214 ACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTC 125272 | | |||| ||| || || || || ||||| ||| || || ||||||||| Sbjct 22123044 CAGGTGACGGAGG-CTCGCTGTTTCTATGGTTTCCAGATCGCTATGGAAAACGTGCACAG 22123102 Query 125273 GGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 || |||||||| || || |||| |||||||| |||||| || Sbjct 22123103 CGAGATGTACTCGCTGCTTATCGACACATACATTCGGGATCCGAAA 22123148 Score = 113 bits (124), Expect = 7e-20 Identities = 233/347 (67%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || ||||| ||||| || || ||||||||| | |||| || ||| ||| | Sbjct 27418243 GGGGACCTGGGTCCAGTTTATGGGTTCCAGTGGCGCCACTTTGGAGCCACGTACGGCACG 27418184 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTC 70186 ||| | || || |||| ||||| ||||| || | |||||| |||| || Sbjct 27418183 TGCCACGATGATTACACGGGCAAGGGTAAAGATCAGCTGGCGGAAATCATCGACAAGCTG 27418124 Query 70187 AAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCAC 70246 |||| |||||| || ||| || ||||| | || || | ||||| || | ||| | | | Sbjct 27418123 AAGAACAATCCCACCGATCGGCGGATCATCCTGAGCGCCTGGAACCCGGTGGATATTCCC 27418064 Query 70247 CAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTG 70306 ||||| || || || || |||||||||| ||||||||| | | || | || Sbjct 27418063 ATTATGGCCCTTCCGCCCTGCCACTGTTTGGTGCAGTTTTACGTGGCAAACGGTGAGCTG 27418004 Query 70307 TCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCA 70366 || ||| ||||| || | || || | || || || || || || |||||||| Sbjct 27418003 TCCTGCCAGATGTACCAACGATCCGCAGATGTTGGGCTGGGCGTGCCATTCAACATTGCG 27417944 Query 70367 AGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAA 70413 ||||| || || ||||||||||||| || || | || || ||||| Sbjct 27417943 AGCTACTCGCTGCTGACGCACATGATCGCGCATGTAACGGGACTGAA 27417897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057338088760