Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 6e-15 seq2 95.1 6e-15 >seq3 Length=33601328 Score = 95.1 bits (104), Expect = 6e-15 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2700228 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2700169 Query 11516 TGAGCTAATGGGCCGTCGA 11534 ||||||| ||||| |||| Sbjct 2700168 TGAGCTATGGGGCCTTCGA 2700150 Score = 91.5 bits (100), Expect = 8e-14 Identities = 83/103 (81%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 11429 AAATATAGAAT--TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||||| ||||| ||| |||| | | |||| | || |||||||||| ||||||| Sbjct 2699495 AAATA-AGAATGCTAAAAAAAGTACCTAATGGCTCCAGAGAGGATCGAACTCACGACCTT 2699553 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| ||||||||||||| ||||| Sbjct 2699554 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTATGGGGCC 2699596 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2700780 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2700721 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 2700720 TGAGCTATGGGGCC 2700707 >seq2 Length=51801758 Score = 95.1 bits (104), Expect = 6e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 29758280 ATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCA 29758221 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||| ||||| Sbjct 29758220 ACTGAGCTATGGGGCC 29758205 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 23364696 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 23364637 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 23364636 TGAGCTATGGGGCC 23364623 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261490559428276