Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 188 1e-43 seq4 158 2e-34 seq33 154 2e-33 >seq3 Length=33601328 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| || |||||||| |||||||| ||||| || ||| Sbjct 11440008 GCCAAGCGTCACCGAAAGGTTCTTCGCGACAACATCCAGGGAATCACGAAGCCGGCCATC 11440067 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| |||||||| || || |||||| ||||||| || |||| ||||||| Sbjct 11440068 CGTCGTCTGGCGCGTCGTGGCGGCGTGAAGCGTATCTCTGGCCTGATCTACGAAGAGACC 11440127 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| ||| ||| |||| |||||| || ||| |||||| Sbjct 11440128 CGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCGGTCACCTACACCGAG 11440187 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| || || | ||||| | || || || |||| ||||| ||| Sbjct 11440188 CACGCCAAGCGCAAGACAGTGACGGCTATGGACGTGGTGTACGCTCTGAAGCGTCAGGGC 11440247 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| | ||| Sbjct 11440248 CGCACCTTGTACGGTTTCGGAGGCTAA 11440274 >seq4 Length=34682002 Score = 158 bits (174), Expect = 2e-34 Identities = 199/271 (73%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | | || || ||||| ||||| || |||||||| || || || Sbjct 21904239 GCCAAGCGTCACCGGA-AGGTGTTGCGTGATAATATCCAGGGCATCACCAAACCCGCCAT 21904181 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||| |||||| | || || || |||| ||||| | Sbjct 21904180 CCGCCGTCTGGCTCGCCGTGGAGGAGTGAAGCGTATTTCCGGTCTGATCTACGAAGAAAC 21904121 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| |||||||| |||||| || ||| || || Sbjct 21904120 GCGCGGTGTCCTGAAGGTGTTCCTGGAGAACGTTATCCGCGATGCTGTCACCTACACGGA 21904061 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || ||||| || ||||| |||||||| | || || || |||| || || || Sbjct 21904060 ACACGCCAAGCGTAAAACCGTCACGGCCATGGATGTGGTGTACGCCCTGAAGCGCCAGGG 21904001 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || ||||| || ||||| || Sbjct 21904000 ACGCACTCTCTACGGTTTCGGCGGTTAAGCT 21903970 >seq33 Length=8323 Score = 154 bits (170), Expect = 2e-33 Identities = 180/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| ||||||||||| ||||| ||| Sbjct 3 CGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGTGGCGGA 62 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || || |||| || || | |||| || |||| | || ||| Sbjct 63 GTGAAGCGTATCTCCGGCCTGATCTACGAGGAAACGCGTGGAGTGCTGAAAGTGTTTCTC 122 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||||| | ||| || || || || || ||||||||||| || Sbjct 123 GAGAACGTGATCCGCGATGCCGTTACCTACACGGAACATGCCAAGCGTAAGACTGTTACG 182 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||||| | || || || |||| ||||| ||||| | | || ||||| ||| || Sbjct 183 GCCATGGATGTGGTGTACGCTCTGAAGCGTCAGGGCCGCACTCTGTACGGTTTCGGAGGT 242 Query 16697 TAA 16699 ||| Sbjct 243 TAA 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075016224293