Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4 141 6e-29 seq1 96.9 2e-15 seq2 91.5 1e-13 >seq4 Length=34682002 Score = 141 bits (156), Expect = 6e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217 |||||||| ||| | |||||||| |||||||| | ||| |||||||| ||||| || Sbjct 15714149 CACGATGGCTACCGTCAACGTAAACCGTAATGTCACCGACATCTTCTACCGGTACAAGAT 15714090 Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277 ||| |||||| || ||||| || || ||||| ||||| ||||| || || || || || Sbjct 15714089 GCCTCGCATCAATGCGAAGGTGGAAGGCAAGGGTAACGGCATTAAGACGGTAATCGTGAA 15714030 Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337 ||| | || || || ||| | || || ||||| ||||| ||||| || || || || Sbjct 15714029 TATGGCCGAGGTTGCCCGGGCCATTGGCCGTCCTGCAACCTATCCGACCAAGTACTTTGG 15713970 Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||||| || || ||||||||||| || || |||| Sbjct 15713969 ATGCGAGCTCGGTGCTCAGACGCAATTCGACTACAA 15713934 Score = 120 bits (132), Expect = 2e-22 Identities = 201/288 (70%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| || ||||| || || || ||||| | | | ||||||||||| | |||||| Sbjct 15713847 AACGAACGATTCATTGTAAATGGTTCGCACGATGCGACGAAGCTGCAGGATCTGCTTGAC 15713788 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 ||||| ||||||||||| ||||| || | ||| || || || ||||| || || || || Sbjct 15713787 GGCTTCATTCGCAAGTTCGTGCTCTGCCCGGAGTGTGACAATCCGGAAACGGATCTCATC 15713728 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || | |||| || || || ||||| ||||| || ||||||| |||||| | Sbjct 15713727 GTATCGTCGAAGAAGGGAACGATTTCGCAGGGTTGCAAGGCCTGCGGTTTCCATGGGCCG 15713668 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCACCTAA--AGACC 6612 || || || || || | ||||| ||||| | ||||| ||||| || || | Sbjct 15713667 CTCGAGGTAAACCATAAGGTGAACACGTTCATCATCAAGAA---CCCACCGAACGTGAAC 15713611 Query 6613 CTAGCACG-CAGGGTTCTTCGCAAAATAAGAGCAACCGTGGCAAGCGC 6659 | ||| | ||||| | |||| || || | || ||| |||||||| Sbjct 15713610 CCGGCAAGCCAGGGAGCGTCGCTAACCGAGGGTAAGCGTAGCAAGCGC 15713563 >seq1 Length=37976048 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||| ||||| ||||| || |||||| || || ||||| || || Sbjct 21735260 ACCACCACGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 21735319 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || |||| |||| || | || || ||||| || || || || || ||||| | || Sbjct 21735320 CAGGGTACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGG 21735379 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||| || |||||| || || ||||||||||| || ||||| || || Sbjct 21735380 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 21735439 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || |||||||| | |||||| ||||| |||||||| Sbjct 21735440 CTCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 21735487 >seq2 Length=51801758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | ||||| || || || |||||| || || ||||| | Sbjct 21000373 CATT-CCACCACGCAGACGTAGGACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGT 21000431 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| || | || || | || ||||| || || || || || || ||||| | Sbjct 21000432 CGGACAGCGTGCGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTG 21000491 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | |||||| |||||| ||| ||| |||||| |||| | ||||| | Sbjct 21000492 GGGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCAATCGTATCCGATGGCT 21000551 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || | || || || || || |||| ||| |||||||| ||||||||||| Sbjct 21000552 CGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATGTT 21000606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946379484031