Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 158 1e-33 seq4 111 2e-19 seq5 102 9e-17 >seq3 Length=33601328 Score = 158 bits (174), Expect = 1e-33 Identities = 285/417 (68%), Gaps = 0/417 (0%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || ||||| || |||||||| ||||| | || |||||||| || | | | || Sbjct 22123641 ATCCGCCACAAACTCGATGTACTGGGACATGAGTTCGCAATTCATGCCCAACATATCGAC 22123582 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 || || || | ||||| ||| || | ||||||| |||| || || | || || | Sbjct 22123581 TGGCAGTGCTTTGGTCAGGAACTCCTGCTCGATTGCAACCGCATCCCGGATAATGTCCGT 22123522 Query 93046 TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGT 93105 || | | | ||| || |||| | ||| ||| |||| | || ||||||||| Sbjct 22123521 CACACGCTTGCGCGATGGCTTCTGTATCAGATACTTGAACATGAGACAGGCAAAGTCGCA 22123462 Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 ||| |||||||| || || || |||||||||||| ||| || ||||| || | ||| || Sbjct 22123461 ATGCAAACCTTCATCGCGCGAGATCAACTCATTGGAGAACGTCAAACCCGGCATCAGGCC 22123402 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 || ||||| ||||| || || | ||||| || || || || || || || || || Sbjct 22123401 ACGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCGCTGAAGAAGATGCCCTCGACAGC 22123342 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285 ||| || ||||| ||||| ||| | | || || || || |||||| || | || Sbjct 22123341 TGCGAACGCCACGATACGCTCGCCGTAGTTGGCCTTCTTGCTCGAGATCCAGTTCATCGC 22123282 Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 ||| || || || ||| | ||| || || || ||||| || || || ||| |||| Sbjct 22123281 CCAGTCCGCCTTACGCTTCACACACGGCAGCGTCTCGATGGCATTGAACAGGAAATC 22123225 Score = 127 bits (140), Expect = 2e-24 Identities = 199/282 (71%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 93344 CGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACA 93403 || || | || ||| || |||||||| ||||| | ||| || ||||| || || || Sbjct 22123153 CGTTCTTTCGGATCCCGAATGTATGTGTCGATAAGCAGCGAGTACATCTCGCTGTGCACG 22123094 Query 93404 TTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 || ||||| || || ||||| || |||||||| | ||| ||||| | ||| || || || Sbjct 22123093 TTTTCCATAGCGATCTGGAAACCATAGAAACAGCGAGCCTCCGTCACCTGAACCTCCTGG 22123034 Query 93464 GAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAAT 93523 || | || || |||||||| || || ||||||||||| || ||||| || || | Sbjct 22123033 CTGAACCGTTCGACCAGATTTTCGTTCACGATACCATCGGAGGCGGCAAAGAAGGCGAGC 22122974 Query 93524 ATATGCTTTATAAAATGTTTCTC-ATCATCTTTAAGCTTATCCCAATCGGATAGATCTTT 93582 | |||| ||||| || ||| || | || ||| |||||| || | || || Sbjct 22122973 ACATGCGAGATAAAGTGACGCTCGCTCGGC-TTCAGCGCATCCCAGTCTTTCATGTCCTT 22122915 Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || |||||||| |||||||| ||||| || || ||||| || Sbjct 22122914 AGATAGATCGACCTCTTCGACCGTCCAGAAAGAAGCTTCGGC 22122873 >seq4 Length=34682002 Score = 111 bits (122), Expect = 2e-19 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1023924 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 1023865 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 1023864 GTGGGTTCGAACCCCACTTCTGACA 1023840 >seq5 Length=12318379 Score = 102 bits (112), Expect = 9e-17 Identities = 76/87 (87%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG--C 126322 ||||||| |||||||||||| |||||||||||||||||| |||||||| | ||| | Sbjct 6114072 AGTCAGGATGGCCGAGTGGT-TAAGGCGCCAGATTTAAGCTCTGGTTCTCGTAAGAGATC 6114130 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||| ||||||||| Sbjct 6114131 GTGGGTTCGAACCCCACTCCTGACAAA 6114157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859400887240