Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 210 2e-49 seq2 98.7 8e-16 >seq1 Length=37976048 Score = 210 bits (232), Expect = 2e-49 Identities = 1044/1640 (64%), Gaps = 28/1640 (2%) Strand=Plus/Plus Query 128775 CGACTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACAT 128834 ||| ||||| |||||||| | ||| || | | |||||||| ||||| ||||| ||||| Sbjct 148841 CGATTTGTCAACGGTAAACTGAATCGCATTAACAGCCGGCTTCGTGCGTAAATAATACAT 148900 Query 128835 GCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGT 128894 |||||||| | || | ||||| || | ||||| | || | ||||| | Sbjct 148901 CCCTGTTTTAAGGCCCATCTTCCAGCCGTAGAAATGAATTGATGTTAGTTTACCGTAGTT 148960 Query 128895 GGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGC 128954 || | | | |||||| || || || |||||||||||| | || |||||||| Sbjct 148961 TGGCTCAGCTACGTGAATATTGAAAGACTGCGATTGATCAATAAATGCCCCTCGATCGGC 149020 Query 128955 AGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCAC 129014 ||||| ||| || |||||||| |||||||| ||||||||||| || | | | Sbjct 149021 CGCCATTTTAATGCAAGTTTTCACTGATATTTCCCAGACCGTTTTGTACAGATTGCGTAT 149080 Query 129015 GTGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCG 129074 ||||| || ||||| || || || || | || |||| || | || |||||| Sbjct 149081 GTGTTGCGGAATTTCCTCTATATTTTGTATTGATCCATTGTGGGCCAAGATCTTGTTTTT 149140 Query 129075 CATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTAC 129134 ||| | || | | | | || | ||| ||| | ||| | | || | || Sbjct 149141 CATTTCATCATCCCAGAGCTCCAACTCAGTCAGATCCTTTAGCAAATGATGATTCACCAC 149200 Query 129135 TTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGA 129194 |||||| || || | | || | || ||| | ||| ||| |||| || || || Sbjct 149201 TTGAAATTCTCCTGAGAGCACCCTACGGTTGTAGACGTTTGATGTGTACGGTTCGAAAGA 149260 Query 129195 TTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGA 129254 || |||||||| | ||||| || || | ||||| ||||| ||| | ||||| Sbjct 149261 CTCGTTGTTGCCGAGGATTTGGGCAGTCGAAGCGGTTGGCATAGGAGCTAGTAGCAGCGA 149320 Query 129255 GTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGT 129314 || |||||||||| | ||| | ||| || | || | ||| | ||||| ||| Sbjct 149321 ATTACGCAAACCGTACGTAGCAATTTTTTTCTTAAGTTCAGCCCAATTCCACAATTCTGT 149380 Query 129315 GGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTA 129374 ||| | | ||||| |||||||| | || || || | || || | || Sbjct 149381 GGGCTTCCTGTCCCACATATCGTATTGAAGAATTCCTCTGCTAACCGGGCTTCCATCATA 149440 Query 129375 GGAATCGTGCACGCCGT-AAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAAT 129433 | |||| || | |||| ||||| ||||| || ||||| | ||| || |||| Sbjct 149441 TGTTTCGTATGGACCATCAAGCGCA-GCCAACTCGCAGCTTGCTTCAAGTGCCCCGAAAT 149499 Query 129434 AAATTGTTTCGGCAATTTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATA 129492 |||| ||||| |||| | || || |||| | ||| | || ||||| || || Sbjct 149500 AAATGGTTTCAAACATTT-GTTGATTTAACAACTGGGCTTCTTCACTTTCATAAGGATGG 149558 Query 129493 CGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTT 129552 |||| || | || | || |||| ||||| | || | ||| || || || || Sbjct 149559 CGCATCAAGATGAAAGCATCTGCCATGCCTTGCACTCCGATACCTATCGGACGGTGGCGC 149618 Query 129553 CTATTGGATT--TTTG-TGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTT 129609 |||| ||| |||| | ||| | || |||||||||||||| || || |||||||| Sbjct 149619 ATATTAGATCGCTTTGCTTCCGGGA-CA--GGATAGTAGTTGATATCGATGATTTTGTTC 149675 Query 129610 AAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTAC- 129668 | |||| ||| |||| | ||| | |||| | | | |||| ||| ||| Sbjct 149676 AGATTCCGAGTAACAGTTTTGGCTACCTCCTTTAGCTTCGCGAAATCGTATG----TACG 149731 Query 129669 ATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTT 129728 |||| | ||||| || | | |||||||||| ||| || || ||| |||| | Sbjct 149732 ATCGGGTTTTACAAACATGTTTAGAGCGATCGAGGCCAGATTACACACAGCAATTTCATC 149791 Query 129729 TTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATG 129788 ||| | ||| || |||||||||| ||||| || | || || || || | | Sbjct 149792 TTTTGAAGAGTATTCCACAATTTCGGTGCACAGGTTTGAACACTTGATCGTTCCAACGTT 149851 Query 129789 CTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 | ||| ||||| || ||||| ||||||||||| | |||||| ||| || || || Sbjct 149852 TTGTTGGTTACTCTTTCGATTGCACGCATCTTTGTAGAGCATGTAAGGCACTCCAGTCTC 149911 Query 129849 GACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTTACAAATTT 129908 || |||| || | |||| |||| ||| | ||||| | ||||| || Sbjct 149912 AACCTGCGACTCTATGATGGCGAACCACAAATCTTGCGCCTTAACCTGTCGCGTGAAACG 149971 Query 129909 GCCACATTTCTCGTATGCCACA-TACAGTTGTTCAAATTC-TGAGCCG-TGTACGGTGTC 129965 || |||||| |||| || |||| || || || | | || ||| | | | Sbjct 149972 ACCCTCGCGCTCGTA-GCCAGTGTAGAGTTTTTGGAACTCCTCACCCCATGT-CTCCGAC 150029 Query 129966 GAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTT 130025 | | | | | || | | || ||||| |||||||||||| | | |||||||| || | Sbjct 150030 AAACCAGGACAAT-CGTGGGGGCACATTAAACTCCACATTTCGTTTGCTTCGACACGCTG 150088 Query 130026 CATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTC--GCGCTTTTCTATCCTCG 130083 ||| |||||||| || | |||||| ||||| |||| |||| |||| | || || Sbjct 150089 CATGAACAAATCAGGAATCCACAGAGCGTAGAACATGTCTCTAGCGCGGACC--TCTTCT 150146 Query 130084 GCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACA 130143 ||| |||| ||| || || | || || | || || | ||||| || || | | Sbjct 150147 TTTCCCGTGTTCTTTTTAAGGTCCAAAAACTCAAATATATCCCCATGCCATGGCTCCAAA 150206 Query 130144 TAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTG 130200 ||||| || | ||| || || ||| || || ||||| |||| ||| | | |||| Sbjct 150207 TAAATAGCAAATGCCCCAGGTCGCTTGTTACCACCCTGGTCCACGTAACGCGCTGTATTG 150266 Query 130201 TTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAA 130260 |||||||| |||| ||| | | || ||||||| | || || || | | || | Sbjct 150267 TTGTAGACACGCAGCATAGGTACTAACCCGTTGGATATACCATTCGTTCCTGCTATATAT 150326 Query 130261 CTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATC 130320 | || ||| | || ||| || | ||||||||||| ||| | |||| || ||| Sbjct 150327 GTTCCTTTAGCTCTAATACAATGCACATTAAGACCTATGCCACCGGCCGATTTAGAGATC 150386 Query 130321 AACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGG 130380 || || || | || || || ||||| || |||| || || || || | || Sbjct 150387 AATGCACACTGTTTGAGAGTATCGTAAATTCCCTCGATGCTATCGTCCGACATTGTCAGC 150446 Query 130381 AGGAAACACGAGGCCAATTG 130400 ||||| || || | || ||| Sbjct 150447 AGGAAGCAGGACGACAGTTG 150466 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || ||||| | ||||| || || |||| || || || || | Sbjct 36315557 AAAATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTCGAGGTCGAGCCA 36315616 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || | || || || || ||||||||||| || || || ||| Sbjct 36315617 TCGGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGAT 36315676 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | |||||| ||| ||| | || || ||| Sbjct 36315677 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTTCGGACTAC 36315736 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || ||| | ||| | || ||||| | || || ||| Sbjct 36315737 AACATCCAGAAGGAGTCGACCCTGCATCTTGTACTGCGACTTCGTGGTGGT 36315787 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || ||||| | || ||||| || |||| ||||| || || || | Sbjct 21735488 GATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTC 21735429 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | || || || || ||||||||||| ||||| || ||||| Sbjct 21735428 GGATACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCA 21735369 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||||| || || |||||||| ||| | || || || ||| | ||||| ||||| Sbjct 21735368 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGACGGACGTACCCTGTCCGACTACAA 21735309 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || || || Sbjct 21735308 CATCCAGAAGGAGTCGAC 21735291 >seq2 Length=51801758 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || ||||||| || ||||| | | Sbjct 36664692 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTTCG 36664751 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || ||||||||||| ||||| || ||||| Sbjct 36664752 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAG 36664811 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || |||||||| ||| | ||||| || ||| | |||||||| ||| Sbjct 36664812 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACCCTGTCCGATTATAAC 36664871 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | || || || | || |||| || || Sbjct 36664872 ATCCAGAAGGAGTCGACCCTGCACTTGGTCCTCCGTCTGCGTGGTGG 36664918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726971797565