Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 159 3e-34 seq1 82.4 8e-11 >seq3 Length=33601328 Score = 159 bits (176), Expect = 3e-34 Identities = 303/439 (69%), Gaps = 13/439 (3%) Strand=Plus/Plus Query 52305 CTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAA 52363 ||| | ||||| ||||| ||| ||||||| || ||||| | ||||| ||||| Sbjct 22123231 CTGTTCAATGCCATCGAG-ACGCTGCCGTGTGTGAAGCGTAAGGCGGACTGGGCGATGAA 22123289 Query 52364 GTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGA 52423 |||||| |||| | | |||| | |||||| || ||||| ||||| ||||| Sbjct 22123290 CTGGATCTCGAGCAAGAAGGCCAACTACGGCGAGCGTATCGTGGCGTTCGCAGCTGTCGA 22123349 Query 52424 GGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAAT 52483 |||| | || || |||||||||||| |||||||| | | || | | ||| | || Sbjct 22123350 GGGCATCTTCTTCAGCGGCAGCTTTGCGGCCATCTTCTGGCTGAAGAAGCGTGGCCTGAT 22123409 Query 52484 GCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTT 52543 ||| || |||||||| ||| |||||||| |||||||| ||||| |||| ||||| Sbjct 22123410 GCCGGGTTTGACGTTCTCCAATGAGTTGATCTCGCGCGATGAAGGTTTGCATTGCGACTT 22123469 Query 52544 TGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGA- 52602 ||| || ||| | |||| | | || ||| | ||| || | ||| Sbjct 22123470 TGCCTGTCTCATGTTCAAGTATC-TGATACAGAA-----GCCATCGCGCAAGCGTGTGAC 22123523 Query 52603 --GCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || ||| ||||| || ||||| ||||||| | || || ||||| || Sbjct 22123524 GGACATTATCCGGGATGCGGTTGCAATCGAGCAGGAGTTCCTGACCAAAGCACTGCCAGT 22123583 Query 52661 CGAGCTGCTGGGCATGAA-CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATC 52719 ||| || |||||||||| ||| | | ||||| | |||||||||||||||||||||||| Sbjct 22123584 CGATATGTTGGGCATGAATTGCGAACT-CATGTCCCAGTACATCGAGTTTGTGGCGGATC 22123642 Query 52720 GTCTGTTGGTGCAGCTCGG 52738 | ||| ||||| |||| || Sbjct 22123643 GGCTGCTGGTGGAGCTGGG 22123661 >seq1 Length=37976048 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || | ||| | | | |||||||| || ||||||||||| | ||||| Sbjct 36315774 CGCAGTACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCA 36315715 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| || || || |||| |||| |||||||| || || || || || || || ||| Sbjct 36315714 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTG 36315655 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| || || | | || | |||||| | | ||| ||||||| || | Sbjct 36315654 TCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTGATG 36315595 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || ||||| || ||||||||||| Sbjct 36315594 GTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 36315560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261153140720