Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 219 4e-52 seq2 84.2 2e-11 >seq1 Length=37976048 Score = 219 bits (242), Expect = 4e-52 Identities = 1172/1855 (63%), Gaps = 28/1855 (2%) Strand=Plus/Minus Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTCGAGGAAAAG 122900 ||||| ||||| || | |||||| ||||||| ||| || ||||| | | ||| Sbjct 150679 TACAATTATTTCGGTTTCAAAACATTAGAAAGATCATACCTGTTGAAAATTAAAGGGAAG 150620 Query 122901 GTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGAC 122960 | | ||||| ||||| ||||||||||| || ||||| ||| | || || ||| Sbjct 150619 ATTGTAGAACGGCCACAACACATGCTCATGCGTGTTGCTATCGGCATACATGGTGCAGAC 150560 Query 122961 ATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGT 123020 || || || | || || ||| | ||| ||||| | || || |||||||| Sbjct 150559 ATTGATGCTGCAATTGAGACGTACAACTTGCTGTCTGAGCGATACTTTACGCACGCCTCG 150500 Query 123021 CCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACC 123080 || || |||| || || | || | || || |||| || || || |||| || Sbjct 150499 CCAACCATGTTTGCTGCAGCAACTCAACGACCACAACTGTCGTCCTGCTTCCTGCTGACA 150440 Query 123081 TTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCC 123140 || || || |||||| || || || || ||| | | || || ||||| || Sbjct 150439 ATGTCGGACGATAGCATCGAGGGAATTTACGATACTCTCAAACAGTGTGCATTGATCTCT 150380 Query 123141 AAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATC 123200 |||| | ||| |||||||| | || ||||| | |||| |||| || Sbjct 150379 AAATCGGCCGGTGGCATAGGTCTTAATGTGCATTGTATTAGAGCTAAAGGAACATATAT- 150321 Query 123201 AGAAGCACCGAC-GGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGC 123259 || || | ||| || || || |||| | | | | |||||||| || ||||| || | Sbjct 150320 AGCAGGAACGAATGGTATATCCAACGGGTTAGTACCTATGCTGCGTGTCTACAACAATAC 150261 Query 123260 CGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAAA--GGCGCGATGGCGATCTATCTAGA 123316 | ||| |||| |||||||| || || | || | || || | || || ||| | || Sbjct 150260 AGCGCGTTACGTGGACCAGGGTGGTAACAAGCGACCTGGGGCATTTGCTATTTATTTGGA 150201 Query 123317 ACCGTGGCACGTTGATGTGTACGATTTTTTAAAT-TTAAAACGCAACATGGGGGCGGAAG 123375 || ||||| | ||| | | || ||||| | |||||| | |||| ||| |||| Sbjct 150200 GCCATGGCATGGGGATATATTTGAGTTTTTGGACCTTAAAAAG-AACACGGGAAAAGAAG 150142 Query 123376 AAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCG 123435 | || | || |||| |||||| | ||| | || |||||||| |||| || | Sbjct 150141 AGGTCCGCGCTAGAGACATGTTCTACGCTCTGTGGATTCCTGATTTGTTCATGCAGCGTG 150082 Query 123436 TAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACG 123495 | ||| ||| ||||| | ||||| ||| | ||||| || ||| || Sbjct 150081 TCGAAGCAAACGAAATGTGGAGTTTAATGTGCCCCCACGATTGTCCTGGTTTGTCGGAGA 150022 Query 123496 TTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA--CAGGT 123553 | || | |||| | | | ||| | ||||||||||| || || | Sbjct 150021 CATGGGGTGAGGAGTTCCAAAAACTCTACACTGGCTACGAGCGCGAGGGTCGTTTCACGC 149962 Query 123554 TAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGG 123613 | |||||| ||| | ||||||| || || || | || || || || || Sbjct 149961 GA--CAGGTTAAGGCGCAAGATTTGTGGTTCGCCATCATAGAGTCGCAGGTTGAGACTGG 149904 Query 123614 AACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGG 123673 | ||| ||||||||||||||||| || ||||| | || | || || ||| | || Sbjct 149903 AGTGCCTTACATGCTCTACAAAGATGCGTGCAATCGAAAGAGTAACCAACAAAACGTTGG 149844 Query 123674 AACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGT 123733 ||| || || ||| || || ||| |||||||| | |||||| ||| || | Sbjct 149843 AACGATCAAGTGTTCAAACCTGTGCACCGAAATTGTGGAATACTCTTCAAAAGATGAAAT 149784 Query 123734 GGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACGGCGCTTTTA- 123792 || ||||||||| |||| ||||| || || | | | | ||||| || | || Sbjct 149783 TGCTGTGTGTAATCTGGCCTCGATC-GCTCTAAACAT-GTTTGTAAAACC-CGATCGTAC 149727 Query 123793 -----ATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAAT 123847 ||||| | ||| || || | |||||||| |||| |||||||||| Sbjct 149726 ATACGATTTCGCGAAGCTAAAGGAGGTAGCCAAAACTGTTACTCGGAATCTGAACAAAAT 149667 Query 123848 TATCGATGTTAATTTTTATCCTTTGGAGGAAGC---GCGTTTGTCTAATTTGAAACACAG 123904 |||||| | || | |||||| | |||||| ||| | ||||| || ||| | Sbjct 149666 CATCGATATCAACTACTATCCTGTCCCGGAAGCAAAGCGAT---CTAATATGCGCCACCG 149610 Query 123905 ACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTA 123964 ||| | || | || | ||||| |||| || || || | || ||||| || || Sbjct 149609 TCCGATAGGTATCGGAGTGCAAGGCATGGCAGATGCTTTCATCTTGATGCGCCATCCTTA 149550 Query 123965 CGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGC 124024 ||||| || ||||| ||||| | ||| ||||| ||||| ||||||| ||| || Sbjct 149549 TGAAAGTGAAGAAGCCCAGTTGTTAAATCAACAAATGTTTGAAACCATTTATTTCGGGGC 149490 Query 124025 TTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAG 124084 | || || |||||||| | || || | || | ||||||| || | || || Sbjct 149489 ACTTGAAGCAAGCTGCGAGTTGGCTGCGCTTGATGGTCCATACGAAACATATGATGGAAG 149430 Query 124085 CCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTG 124144 ||||| ||| |||| ||| | || ||||| |||||| | | || ||| | ||||| Sbjct 149429 CCCGGTTAGCAGAGGAATTCTTCAATACGATATGTGGGACAGGAAGCCCACAGAATTGTG 149370 Query 124145 GGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGT 124204 | | ||| | | || || || | ||| ||||||||||||| |||||| | | Sbjct 149369 GAATTGGGCTGAACTTAAGAAAAAAATTGCTACGTACGGTTTGCGTAATTCGCTGCTACT 149310 Query 124205 GGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCC 124264 || ||||| || || | ||||| ||||| | || |||||||| || ||||| || Sbjct 149309 AGCTCCTATGCCAACCGCTTCGACTGCCCAAATCCTCGGCAACAACGAGTCTTTCGAACC 149250 Query 124265 GTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCA 124324 || ||| || | ||| || | ||| | | || || ||||||||| | ||||| Sbjct 149249 GTACACATCAAACGTCTACAACCGTAGGGTGCTCTCAGGAGAATTTCAAGTGGTGAATCA 149190 Query 124325 TCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGCAACGAAAT 124384 ||||||| | | || || | ||| | | | ||||| | ||| ||| | || Sbjct 149189 TCATTTGCTAAAGGATCTGACTGAGTTGGAGCTCTGGGATGATGAAATGAAAAACAAGAT 149130 Query 124385 TATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTCAAGCAA-C 124443 | || | ||| | || || | |||||| ||||| | | |||| | Sbjct 149129 CTTGGCCCACAATGGATCAATACAAAATATAGAGGAAATTCCGCAACACAT-ACGCAATC 149071 Query 124444 TGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGAAATGGCCGTCGACCGAG 124503 |||||||||| || |||||||| | ||| | ||| ||||||| | ||| |||| Sbjct 149070 TGTACAAAACGGTCTGGGAAATATCAGTGAAAACTTGCATTAAAATGGCGGCCGATCGAG 149011 Query 124504 GCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCACCTACGCCC 124563 | || | | |||||| || ||||| || | ||||| || || | ||||| Sbjct 149010 GGGCATTTATTGATCAATCGCAGTCTTTCAATATTCACGTAGCTGAGCCAAACTACGGTA 148951 Query 124564 GCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGGCATGTATTACT 124623 | || || || | ||| |||| | || || ||||| || |||||||| | Sbjct 148950 AACTAACATCAATTCATTTCTACGGCTGGAAGATGGGCCTTAAAACAGGGATGTATTATT 148891 Query 124624 TAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAAATCTAAACT 124678 || | || || ||||| | |||| ||||| |||||||| |||||||| || || Sbjct 148890 TACGCACGAAGCCGGCTGTTAATGCGATTCAGTTTACCGTTGACAAATCGAAGCT 148836 >seq2 Length=51801758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 |||||||| || ||||| ||||| || || ||| ||| | | || ||| |||| | Sbjct 21000401 TGCAGCGTAGACTCCTTCTGGATGTTGTAGTCG--GACAGCGTGCGACCATCCTCCAGCT 21000458 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | ||||| ||| | || | || ||||| || || ||||||||||| || || ||||| | Sbjct 21000459 GCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCT 21000518 Query 45256 TTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || || | || | || | || || || | |||||| || ||||| | || || || Sbjct 21000519 TTGCCTTCA-CGTTCTCAATCGTATCCGATGGCTCGACCTCCAGAGTGATGGTCTTTCCT 21000577 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || ||||| ||||| Sbjct 21000578 GTCAGGGTCTTCACGAAAATCTGCAT 21000603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002064341960