Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 136 6e-27 seq3 129 9e-25 >seq1 Length=37976048 Score = 136 bits (150), Expect = 6e-27 Identities = 331/499 (66%), Gaps = 2/499 (0%) Strand=Plus/Plus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 ||||| ||||| || || |||||||| || || || || ||| | | | | ||| || Sbjct 148838 CTTCGATTTGTCAACGGTAAACTGAATCGCATTAACAGCCGGCTTCGTGCGTAAATAATA 148897 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 ||| || || || |||||| ||| ||| ||||| | || || || | ||||| | Sbjct 148898 CATCCCTGTTTTAAGGCCCATCTTCCAGCCGTAGAAATGAATTGATGTTAGTTTACCGTA 148957 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 ||| || || || | |||||| || | |||||| ||| || || || | | | ||||| Sbjct 148958 GTTTGGCTCAGCTACGTGAATATTGAAAGACTGCGATTGATCAATAAATGCCCCTCGATC 149017 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||| || || || ||| || || ||||| ||||| ||| ||| | | Sbjct 149018 GGCCGCCATTTTAATGCAAGTTTTCACTGATATTTCCCAGACCGTTTTGTACAGATTGCG 149077 Query 204073 GGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 ||||||| || | || || | | || || || || |||| ||||| | | Sbjct 149078 TATGTGTTGCGGAATTTCCTCT-ATATTTTGTATTGATCCATTGTGGGCCAAGATCTTGT 149136 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 | || | || || |||| | ||||| |||| ||| | || || | || | Sbjct 149137 TTTTCATTTCATCATCCCAGAGCTCCAACTCAGTCAGATCCTTTAGCAAATGATGATTCA 149196 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | ||||| ||||| || ||||||| ||| || | | ||| ||| | ||||||| Sbjct 149197 CCACTTGAAATTCTCCTGAGAGCACCCTACGGTTGTAGACGTTTGATGTGTACGGTTCGA 149256 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | | |||||||||||||| || || || || || || ||||| ||||| || |||| Sbjct 149257 AAGACTCGTTGTTGCCGAGGATTTGGGCAGTCGAAGCGGTTGGCATAGGAGCTAGTAGCA 149316 Query 204312 GGGAGTTGCGCACACCGTA 204330 | || || |||| |||||| Sbjct 149317 GCGAATTACGCAAACCGTA 149335 >seq3 Length=33601328 Score = 129 bits (142), Expect = 9e-25 Identities = 227/330 (69%), Gaps = 3/330 (1%) Strand=Plus/Minus Query 159741 CCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCC 159800 || |||||| || || |||||||| |||||||| |||| | || || || || | Sbjct 22123654 CCACCAGCAGCCGATCCGCCACAAACTCGATGTACTGGGACATGAGTTCGCAATTCATGC 22123595 Query 159801 CCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGG 159860 ||| || || || || |||| | ||| ||||||| ||| || | ||||| || Sbjct 22123594 CCAACATATCGACTGGCAGTGCTTTGGTCAGGAACTCCTGCTCGATTGCAACCGCATCCC 22123535 Query 159861 TCACAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGA 159920 | ||| | || ||||| | | | ||||| | || | | ||| |||| || Sbjct 22123534 GGATAATGTCCGTCACACGCTTGCGCGATGGCTT---CTGTATCAGATACTTGAACATGA 22123478 Query 159921 GGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGA 159980 | || ||||||||||| |||| || || || || ||||| ||||| ||||| | | | Sbjct 22123477 GACAGGCAAAGTCGCAATGCAAACCTTCATCGCGCGAGATCAACTCATTGGAGAACGTCA 22123418 Query 159981 GGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAA 160040 |||||||| | |||||| || ||||| || ||||||||||| ||||| || | Sbjct 22123417 AACCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCGCTGAAGA 22123358 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGA 160070 |||| ||||| || || || |||||||||| Sbjct 22123357 AGATGCCCTCGACAGCTGCGAACGCCACGA 22123328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153202172560