Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 156 1e-32 seq2 143 6e-29 >seq1 Length=37976048 Score = 156 bits (172), Expect = 1e-32 Identities = 171/227 (75%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| ||| ||||| || || ||||||||||| |||| ||||||||| | | || Sbjct 36315780 CGAAGTCGCAGTACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTA 36315721 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||||||||| ||||||||||| || || ||||| Sbjct 36315720 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCC 36315661 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| |||||| | || || || || | Sbjct 36315660 TCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGT 36315601 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| ||||| || ||||| |||||||| ||||| || |||||| Sbjct 36315600 GTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTG---CATTTT 36315557 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||| ||||||||| | || || Sbjct 21735267 CGGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTA 21735326 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| |||||||||||||| ||||||||||||||||||||||| ||||| ||| || Sbjct 21735327 CGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGAATGCCC 21735386 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| || || | | || || || | Sbjct 21735387 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGG 21735446 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||||||||| ||||| || || || || Sbjct 21735447 GTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTG 21735484 >seq2 Length=51801758 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 21000392 AGGACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCATCC 21000451 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||||||||| |||||||| ||||||||||| || || ||| ||||| ||| Sbjct 21000452 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 21000511 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||||||| || | || || | || || || |||| ||||| ||| Sbjct 21000512 TGAATCTTTGCCTTCACGTTCTCAATCGTATCCGATGGCTCGACCTCCAGAGTGATGGTC 21000571 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||| || Sbjct 21000572 TTTCCTGTCAGGGTCTTCACGAAAATCTG 21000600 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || ||||||||||| |||| ||| || || | || || | ||| || Sbjct 36664903 AGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGACAGGGTACGTCCGTCC 36664844 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| | ||||||||| || ||| ||| || || ||| Sbjct 36664843 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCC 36664784 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||| || | | || || |||| ||||| ||| Sbjct 36664783 TGGATCTTGGCCTTCACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATGGTC 36664724 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || ||||| || || || Sbjct 36664723 TTGCCAGTCAAGGTCTTCACGAAGATCTG 36664695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178918563908467