Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq2 116 4e-21 >seq1 Length=37976048 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| ||||||||||| || || || || Sbjct 21735273 CGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGTCCG 21735332 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| || | |||||||| || | ||| | || ||||||| Sbjct 21735333 TCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGAATGCCCTCCTTG 21735392 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||| || | || || || | |||||| Sbjct 21735393 TCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATG 21735452 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 || || ||||| || ||||| || ||||| ||||| ||||| Sbjct 21735453 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCGTGCAC 21735494 Score = 129 bits (142), Expect = 7e-25 Identities = 163/223 (73%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||||| || |||||| ||||| |||||||| || || || || | Sbjct 36315774 CGCAGTACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCA 36315715 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||| || | || | | ||||||| Sbjct 36315714 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTG 36315655 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---TCCACATCCACCGTG 46555 ||| ||||||| ||| | || | | ||||| |||| || || || | ||| Sbjct 36315654 TCCTGGATCTTCGCCTTCACATTCTCGATGGTGTC---CGATGGCTCGACCTCGAGTGTG 36315598 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 ||||| ||||| || |||||||| || || || |||||||||| Sbjct 36315597 ATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATTTTGC 36315555 >seq2 Length=51801758 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || || ||||| || || || |||| || ||||||||||||||||| Sbjct 36664883 CTCCTTCTGGATGTTATAATCGGACAGGGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAA 36664824 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | || |||||||||| |||||| ||| | | Sbjct 36664823 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 36664764 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | ||||| |||| |||||||| ||||| |||| || || || Sbjct 36664763 CTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCAC 36664704 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 36664703 GAAGATCTGCAT 36664692 Score = 102 bits (112), Expect = 9e-17 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||| ||| |||||| ||||| ||||||||||| || ||||| | || || Sbjct 21000395 ACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCATCCTCC 21000454 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| || | |||||||| || | || | || ||||||||| Sbjct 21000455 AGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGA 21000514 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTT 46561 ||||| ||| | || | | ||| || |||| || || |||| |||||||| Sbjct 21000515 ATCTTTGCCTTCACGTTCTCAATCGTATC---CGATGGCTCGACCTCCAGAGTGATGGTC 21000571 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || || ||||| || || || || || ||||| ||| Sbjct 21000572 TTTCCTGTCAGGGTCTTCACGAAAATCTGCATGTTG 21000607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/238 (70%), Gaps = 11/238 (5%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||| | | ||||| || ||||| | ||| |||| |||| |||| || Sbjct 21004559 CCTCCTTTCAGTCGCAAAACAAGATGAATGGTAGAACCCTTGATGATACTGTATTCTTCC 21004500 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| ||||| |||| |||||| || | ||| Sbjct 21004499 AGGGTGCGACCATCTTCTAGCTGCTTGCCCGCGAAGATCATGCGCTGTTGAT---TCGGT 21004443 Query 46487 ACGCTCTCCT--TGTCCAT-GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCT--CGATT 46541 | |||||| || ||| ||||| ||||| | || | ||| |||||| || || Sbjct 21004442 GGGATCTCCTCACGTTCATCGATCTGTTTCTTCACACTCTCGACC--GTCGCTTCCGGTT 21004385 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 || ||||| | ||||| ||||| |||| | |||| |||||||| ||||| ||||| Sbjct 21004384 CCGTGTCCACAGCAATGGTCTTGCCGGTCAACATTTTCACAAAGATCTGCATGTTTGC 21004327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236979838520