Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 244 1e-59 seq1 145 8e-30 seq2 116 4e-21 >seq3 Length=33601328 Score = 244 bits (270), Expect = 1e-59 Identities = 313/429 (73%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 ||| || || ||||||| || ||||| ||||||||||| || |||||| ||||||||| Sbjct 22123659 CAGCTCCACCAGCAGCCGATCCGCCACAAACTCGATGTACTGGGACATGAGTTCGCAATT 22123600 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | |||| || | || ||||| |||| ||| || || |||||||| || ||||| Sbjct 22123599 CATGCCCAACATATCGACTGGCAGTGCTTTGGTCAGGAACTCCTGCTCGATTGCAACCGC 22123540 Query 132831 GTCGGTGACGATTTCCCTAACGCGCGC-CGCGCTCGGCCGTTGCACCAAATGCTTGAACA 132889 || || || ||| | || ||| |||| | ||| || | || || |||||||| Sbjct 22123539 ATCCCGGATAATGTCCGTCACACGCTTGCGCGAT-GGCTTCTGTATCAGATACTTGAACA 22123481 Query 132890 TCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAG 132949 | | || ||||||||||||||||| || || || | || || | || ||| ||| | Sbjct 22123480 TGAGACAGGCAAAGTCGCAATGCAAACCTTCATCGCGCGAGATCAACTCATTGGAGAACG 22123421 Query 132950 TCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAA 133009 |||| || ||||| ||||| || || || ||||| || ||||| || || ||||| | Sbjct 22123420 TCAAACCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCGCTGA 22123361 Query 133010 AGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGC 133069 |||||| ||||||||| || ||||| ||||| | ||||||||| | |||| | |||| Sbjct 22123360 AGAAGATGCCCTCGACAGCTGCGAACGCCACGATACGCTCGCCGTAGTTGGCCTTCTTGC 22123301 Query 133070 TGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGG 133129 | | ||||||| || |||||| || ||||| || || ||||||| ||| ||||||| Sbjct 22123300 TCGAGATCCAGTTCATCGCCCAGTCCGCCTTACGCTTCACACACGGCAGCGTCTCGATGG 22123241 Query 133130 CGTTCAACA 133138 | || |||| Sbjct 22123240 CATTGAACA 22123232 Score = 163 bits (180), Expect = 3e-35 Identities = 195/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||| || ||| ||||| || ||| ||||| ||||| ||||| || || Sbjct 22123133 GTATGTGTCGATAAGCAGCGAGTACATCTCGCTGTGCACGTTTTCCATAGCGATCTGGAA 22123074 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || || || || ||||| |||||| || || || ||| || ||||||||||| Sbjct 22123073 ACCATAGAAACAGCGAGCCTCCGTCACCTGAACCTCCTGGCTGAACCGTTCGACCAGATT 22123014 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||| ||||| || ||| |||||| || ||||| ||||| ||| ||| || || || Sbjct 22123013 TTCGTTCACGATACCATCGGAGGCGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACG 22122954 Query 133347 CTCGTTGTCGTTCAAGCGC-TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGA 133405 |||| | ||| ||||| |||||||| | ||||||| || || || ||||| |||| Sbjct 22122953 CTCGCTCGGCTTC-AGCGCATCCCAGTCTTTCATGTCCTTAGATAGATCGACCTCTTCGA 22122895 Query 133406 CGGTCCAAAACGACGCCTCGGC 133427 | ||||| || || || ||||| Sbjct 22122894 CCGTCCAGAAAGAAGCTTCGGC 22122873 >seq1 Length=37976048 Score = 145 bits (160), Expect = 8e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| |||||||| || ||||||||| | || |||||| || | Sbjct 21735487 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCG 21735428 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||| ||||| ||||| | || || Sbjct 21735427 GATACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAG 21735368 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| |||||||| |||| || ||||| |||||||||| Sbjct 21735367 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGACGGACGTACCCTGTCCGACTACAAC 21735308 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||||||| || |||||||||| Sbjct 21735307 ATCCAGAAGGAGTCGACGCTTCACCTGGTGCTGCG 21735273 Score = 145 bits (160), Expect = 8e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| ||||||||||| ||||| |||||||| |||| |||||| | Sbjct 36315557 AAAATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTCGAGGTCGAGCCA 36315616 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| |||||||| ||| | || Sbjct 36315617 TCGGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGAT 36315676 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | || ||||| |||||| Sbjct 36315677 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTTCGGACTAC 36315736 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| |||| |||||| | || ||||| Sbjct 36315737 AACATCCAGAAGGAGTCGACCCTGCATCTTGTACTGCG 36315774 >seq2 Length=51801758 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || || || || |||||||| | || |||||| | Sbjct 21000606 AACATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGAGCCA 21000547 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | || |||| | || | ||| || | ||||| || || |||||| | || Sbjct 21000546 TCGGATACGATTGAGAACG-TGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCAGA 21000488 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| || || |||||||| || | ||||| || |||||| Sbjct 21000487 TCAGCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGCACGCTGTCCGACTA 21000428 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | |||||||| ||||| || ||| || | || || Sbjct 21000427 CAACATCCAGAAGGAGTCTACGCTGCACTTGGTCCTACGTCTGCGTGGTGG 21000377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171543315840