Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3 143 2e-28 seq2 105 5e-17 seq4 96.9 3e-14 >seq3 Length=33601328 Score = 143 bits (158), Expect = 2e-28 Identities = 142/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 ||||||||||||| ||||||| ||||| |||||| |||||||||||| ||||| || Sbjct 573631 CAAAAATAGTATTATTTGGATTCATTGCTACTTGATTTTTGGCTGCATCACCAATAAGTC 573690 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 | || || || ||||| | || || ||||| || || ||||| |||||||||||||| | Sbjct 573691 GCTCGGTATCGGTAAACGCCACGTAAGATGGTGTGGTTCGATTGCCTTGATCATTCGCGA 573750 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 |||| ||||| || |||| || | || |||||||| | | || || || ||||||| Sbjct 573751 TAATATCAACCTTTCCATGCTGGAACACTCCTACACACGAATACGTCGTCCCCAAATCAA 573810 Query 518703 TACC 518706 | || Sbjct 573811 TGCC 573814 >seq2 Length=51801758 Score = 105 bits (116), Expect = 5e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 518504 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTG 518563 || || ||||| || || || || || || ||||| || || || || | || | ||| Sbjct 30116719 CCGATCAATCGCTTGGCGTCGAAGATTGTGTTGGTCGGGTTCATGGCCACCTGGTTCTTG 30116660 Query 518564 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 518623 || ||||| || |||||| | || || || || || | ||| || || || || ||||| Sbjct 30116659 GCAGCATCACCGATCAGACGCTCGGTGTCGGTGAAGGCAACGTAGGACGGGGTCGTGCGG 30116600 Query 518624 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 518683 || || || || || |||||||||||||| || |||| || | || || || || || Sbjct 30116599 TTGCCCTGGTCGTTGGCAATAATTTCAACCTTGCCATGCTGAAACACTCCAACGCAGCTG 30116540 Query 518684 AAAGTTGTTCCTAAATCAATACC 518706 | || ||||| | ||||||||| Sbjct 30116539 TAGGTCGTTCCCAGATCAATACC 30116517 >seq4 Length=34682002 Score = 96.9 bits (106), Expect = 3e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 870798 TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGAT 870857 ||||||| |||| |||||| || || || || ||||||||||| ||||||| || ||| Sbjct 32678019 TTATTGTAGATTTTTCTTCACCCAACATCGCAAAAGAAATGCACGTTGGACACTTGCGAT 32677960 Query 870858 CAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATC 870917 | ||||| ||||| || || ||||| || | | || | | || |||||| | Sbjct 32677959 CCACTATAATTGGAGATTCAATTTGCAGATTTCTTGAGTTTTTAGGGTTTGATGTTCTAC 32677900 Query 870918 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 870970 | || |||||| | || || |||||||| || || |||||| | || ||| || Sbjct 32677899 GAATCAATCATATCGGAGACTGGGGAACACAGTTTGGTATGCTTATCGCTCAT 32677847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780812425717906