Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20albimanus_20[genbank_20GCA_5F000349125.2_202017-08-01] 201 sequences; 173,339,239 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq2 82.4 5e-11 >seq1 Length=37976048 Score = 104 bits (114), Expect = 2e-17 Identities = 144/198 (73%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| | || |||| |||||||| || ||||| || Sbjct 36315750 TCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAG 36315691 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| |||||| || || || Sbjct 36315690 ATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCAC--AT 36315633 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || |||| || ||||| || || ||||| || || Sbjct 36315632 --TCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTGATGGTCTTGCCGGTGAGCGTTTT 36315575 Query 34967 CACAAAGATCTGCATATT 34984 ||| || |||||||| || Sbjct 36315574 CACGAAAATCTGCATTTT 36315557 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 21735279 ACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGTCCGTCTTCC 21735338 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||| || |||| | ||||||||||| Sbjct 21735339 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGG 21735398 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || |||| || || ||| || || | ||| ||||| | Sbjct 21735399 ATCTTGGCCTTCAC--ATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATGGTCT 21735456 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||||||| || || || ||||||||||| Sbjct 21735457 TACCCGTGAGGGTTTTGACGAAGATCTGCAT 21735487 >seq2 Length=51801758 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| |||||||| || || ||| | ||| | || ||| Sbjct 36664900 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGACAGGGTACGTCCGTCCTCC 36664841 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 36664840 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 36664781 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| || || | | ||||| | ||| | ||| || || | || ||||| Sbjct 36664780 ATCTTGGCCTTCAC----GTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATGGT 36664725 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | |||||||| |||||||||||| Sbjct 36664724 CTTGCCAGTCAAGGTCTTCACGAAGATCTGCATA 36664691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632804749128